Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E18
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 749 PPGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAP 865
           PP   P    P P P P     P+P+   G P P P  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI--MGGPPPPPPPP 768



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = +2

Query: 737 PGVFPPGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPP 868
           P V  P   P    PVP P P     P P  P G     P  PP
Sbjct: 737 PAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +2

Query: 737 PGVFPPGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAP 865
           P   PP   P      P   P   +   P+ P   P PL +AP
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,105
Number of Sequences: 5004
Number of extensions: 19180
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)