Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E18
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 33 0.20
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 32 0.47
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 1.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.3
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.3
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 29 3.3
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 28 7.6
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 28 7.6
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 710 KTRXGXFXXPGVFP-PGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPPR 871
K + F P +FP P P+ P+P P + P+P+ PF KP P+PK P+
Sbjct: 71 KHKPKPFPKPMLFPKPMPFPK---PMPKSKPKSEPFPNPM-PFPKPKPMPKHKPK 121
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 728 FXXPGVFP-PGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPPR 871
F P +FP P P+ P+P P + P+P+ PF KP P PK P+
Sbjct: 141 FPKPMLFPKPMPFPK---PMPKSKPKSEPFPNPM-PFPKPMPKPKPKPK 185
Score = 31.5 bits (68), Expect = 0.82
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 779 PVPXPCPXTRNTPSPLXPFGKPWPLPKAPPR 871
P+P P + PSP+ PF KP P PK P+
Sbjct: 20 PMPKSKPKSEPFPSPM-PFPKPMPKPKPKPK 49
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 737 PGVFP-PGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPK 859
P FP P P+ P+P P P + P P+ P KP P PK
Sbjct: 192 PKPFPKPMLFPK-PMPIPKPMPFPKPMPKPM-PKHKPKPFPK 231
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 752 PGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPP 868
P P P P PCP P P+ P P P+P PP
Sbjct: 46 PMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPP 84
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 749 PPGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAP 865
PP P P P CP P P P P P P P
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +2
Query: 728 FXXPGVFPPGNXPR--CXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPP 868
+ P PP P C P P P P P+P P P P P P
Sbjct: 83 YVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSP 131
>Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical
protein M117.4 protein.
Length = 662
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = +2
Query: 698 PXWAKTRXGXFXXPGVFP--PGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPPR 871
P + F P + P P + P+ P P P P+ P P P APP
Sbjct: 133 PTSLNDKKSKFEKPNLEPGKPEKPEKLDKPLAKPLPPPSAAPPPVAPLSAPVPSTGAPPS 192
Query: 872 XV 877
V
Sbjct: 193 AV 194
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 683 STPQFPXWAKTRXGXFXXPGVFPPG--NXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLP 856
S P P K+R G P PP P P P P T +P P P P P
Sbjct: 121 SPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEP 180
Query: 857 KAPPR 871
+ PPR
Sbjct: 181 RNPPR 185
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +2
Query: 698 PXWAKTRXGXFXXPGVFPPGNXPRCXXPVPXPCPXTRNTPSP--LXPFGKPWPLPKAPP 868
P ++ T P PP P P P P +++ P P L P P +P PP
Sbjct: 459 PSYSSTTPPTTPKPAPPPPSRIPN-PSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPP 516
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +2
Query: 740 GVFPP-GNXPRCXXPVPXPCPXTRN-TPSPLXPFGKP-WPLPKAPP 868
G +PP P P+P P P T TP P P WP P PP
Sbjct: 258 GQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +2
Query: 737 PGVFPPGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPP 868
P PP P C P P PCP P P P P PP
Sbjct: 27 PPPCPPPPPPMCAPP-PLPCPPPPICPPQFCPPPPMCPPPPPPP 69
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +2
Query: 740 GVFPP-GNXPRCXXPVPXPCPXTRN-TPSPLXPFGKP-WPLPKAPP 868
G +PP P P+P P P T TP P P WP P PP
Sbjct: 268 GQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +2
Query: 749 PPGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKA 862
PP P P P P P TP P P KP PL A
Sbjct: 550 PPPREPTPREPTPEPEPVREPTPPPPPP-AKPRPLTAA 586
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 749 PPGNXPRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPP 868
PP P C P P PCP P P P P+ P
Sbjct: 243 PPPPSPVCMPPPPPPCPMPIPCPPPPPACSCPPPVTMYQP 282
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 779 PVPXPCPXTRNTPSPLXPFGKP 844
P+P P P T P+P+ P P
Sbjct: 110 PIPEPTPVTAEQPTPVDPLSSP 131
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 764 PRCXXPVPXPCPXTRNTPSPLXPFGKPWPLPKAPPRXV 877
P P+P P P P P+ P P P+P P V
Sbjct: 3 PPIPIPIPAPVPVPAPVPQPV-PVPMPMPMPMPMPMPV 39
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 779 PVPXPCPXTRNTPSPLXPFGKPWPLPKAPP 868
PVP P P + P P+ P P P+P P
Sbjct: 12 PVPVPAPVPQPVPVPM-PMPMPMPMPMPVP 40
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 764 PRCXX-PVPXPCPXTRNTPSPLXPFGKPWPLPKA 862
P C PVP P P T +P P P P P+A
Sbjct: 111 PPCHEVPVPVPVPTAPATVAPTAPTDLPTPAPEA 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,479
Number of Sequences: 27780
Number of extensions: 138317
Number of successful extensions: 440
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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