Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E17
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    33   0.36 
U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.           29   5.9  
U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog (hedgeh...    29   5.9  

>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 97  AKRISQSAVNWAALAERVPAEQKAHL 174
           AKR++ S+VNW+ LAER+  E  A L
Sbjct: 5   AKRVATSSVNWSKLAERLVPEHAAEL 30



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 288 MVDTFQKQYEALKIPYPADTQTALVE-SQWNQVKNA 392
           ++D+ QKQYE++KIPY       L E  QW    NA
Sbjct: 69  VLDSLQKQYESVKIPYGEVPAEYLKEVDQWVDYNNA 104


>U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 188 IKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGNGRHIPEA 310
           ++SD+Y+    A+P EP +    V +Q VP+   G + P A
Sbjct: 245 VQSDSYVSPTEADPQEPVEQFVQVGEQVVPVTSAGYYYPVA 285


>U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 1 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 188 IKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGNGRHIPEA 310
           ++SD+Y+    A+P EP +    V +Q VP+   G + P A
Sbjct: 244 VQSDSYVSPTEADPQEPVEQFVQVGEQVVPVTSAGYYYPVA 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,088,459
Number of Sequences: 27780
Number of extensions: 335261
Number of successful extensions: 793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)