Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E15
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 31 1.2
08_02_1256 + 25645085-25645396 30 2.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.1
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.1
12_02_1057 + 25733376-25735439 29 4.8
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 4.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 4.8
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.8
01_07_0082 - 40965947-40967023 29 4.8
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 28 8.4
08_02_0839 + 21693348-21694853 28 8.4
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 28 8.4
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +2
Query: 344 PQXPXXEXXXXNFXGGPXXKXXNFPPGXLXPPPXPPXQKXFXXSPPPXXXGXFXXXPXXP 523
PQ P F P PP PPP PP PPP G F P P
Sbjct: 415 PQSPPPPLPSDAFEQPPPPPEHPPPPESTSPPP-PPTSDPPPVPPPPPTTGSFMPIPSAP 473
>08_02_1256 + 25645085-25645396
Length = 103
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 416 PPGXLXPPPXPPXQKXFXXSPPP 484
PP PPP PP Q+ SPPP
Sbjct: 67 PPPLPSPPPPPPPQQQEEQSPPP 89
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/91 (24%), Positives = 28/91 (30%)
Frame = +2
Query: 269 KXPIXPPGXKNFFXXTXXXXGGXXTPQXPXXEXXXXNFXGGPXXKXXNFPPGXLXPPPXP 448
+ P PP ++ +P P E GG PP PPP P
Sbjct: 1040 RCPHHPPERPHYLPGEVGGAPSPPSPPPPQRENTSVGIQGG-------IPP---LPPPLP 1089
Query: 449 PXQKXFXXSPPPXXXGXFXXXPXXPKNXXGG 541
P + +PPP G P P G
Sbjct: 1090 PTLGDYGVAPPPPSIGAGAPPPPPPPGGITG 1120
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 416 PPGXLXPPPXPPXQKXF-XXSPPPXXXGXFXXXPXXPKNXXG 538
P G L PP PP F +PPP G P P+ G
Sbjct: 1153 PVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGG 1194
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 415 PPXXFXXPPXPPXPKXXXXXPPPXXXG 495
PP PP PP PK PPP G
Sbjct: 346 PPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 392 PXXKXXNFPPGXLXPPPXPPXQKXFXXSPPPXXXGXFXXXPXXPKNXXGG 541
P K PP PPP PP + PPP G P P GG
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAK---GPPPPPPPKGPSPPPPPPPGGKKGG 376
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 392 PXXKXXNFPPGXLXPPPXPPXQKXFXXSPPPXXXGXFXXXPXXPK 526
P K PP PPP PP + PPP P PK
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPK 383
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 416 PPGXLXPPPXPPXQKXFXXSPPPXXXG 496
P G PPP PP K PPP G
Sbjct: 359 PKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 417 PXGXXXPPXXPPPKNXXXXPPPXXNXGXSGXXQXXXKXG 533
P PP PPPK PPP G K G
Sbjct: 347 PPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
>12_02_1057 + 25733376-25735439
Length = 687
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 416 PPGXLXPPPXPPXQKXFXXSPPPXXXG 496
PP L PP PP SPPP G
Sbjct: 256 PPPPLPPPSRPPSSSPAPPSPPPSVSG 282
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +2
Query: 416 PPGXLXPPPXPPXQKXFXXSPPPXXXGXFXXXPXXPKNXXGG 541
PPG PPP PP K PPP G P+N GG
Sbjct: 620 PPGA--PPPPPPPGKPGGPPPPPPRPGSL------PRNLAGG 653
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +2
Query: 416 PPGXLXPPPXPPXQKXFXXSPPPXXXGXFXXXPXXPKNXXGG 541
PPG PPP PP K PPP G P+N GG
Sbjct: 925 PPGA--PPPPPPPGKPGGPPPPPPPPGSL------PRNLAGG 958
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +2
Query: 344 PQXPXXEXXXXNFXGGPXXKXXNFPPGXLX--PPPXPPXQKXFXXSPPP 484
P P NF GP + PP + PPP PP PPP
Sbjct: 60 PGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPP 108
>01_07_0082 - 40965947-40967023
Length = 358
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = +2
Query: 416 PP--GXLXPPPXPPXQKXFXXSPPPXXXGXFXXXPXXPKNXXGGXXXXXKXXXKKXN*GX 589
PP G P PP Q + PPP G P+ GG KK N G
Sbjct: 257 PPQYGYGYPAQPPPPQAGYGYPPPPPQAGYGGGYGYPPQAGYGGYQQQAVKPAKKNNFGM 316
Query: 590 G 592
G
Sbjct: 317 G 317
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 434 PPPXPPXQKXFXXSPPPXXXGXFXXXPXXP 523
PPP P + F +PPP F P P
Sbjct: 53 PPPPPQVIRVFAAAPPPPPAAFFAAVPPPP 82
>08_02_0839 + 21693348-21694853
Length = 501
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 377 NFXGGPXXKXXNFPPGXLXPPPXPPXQKXFXXSPPP 484
N+ P P L PPP PP PPP
Sbjct: 11 NYTALPPTSPLQLPLPYLPPPPPPPQPPLLQLQPPP 46
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 416 PPGXLXPPPXPPXQKXFXXSPPP 484
PP L PPP P Q+ PPP
Sbjct: 31 PPPPLPPPPPGPLQRRSSLPPPP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,292
Number of Sequences: 37544
Number of extensions: 262115
Number of successful extensions: 2645
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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