Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E14
         (1458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.70 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   6.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   8.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   8.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = -3

Query: 865  VRXXRXFPPXVXAGVXXXPX---PPPPAXPXXPXRPPPAXXP 749
            VR     PP + A     P    PPPP+ P  P  PP A  P
Sbjct: 1692 VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 805 PPPPAXPXXPXRPP 764
           PPPPA P  P RPP
Sbjct: 273 PPPPATPSQPPRPP 286


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 811 PXPPPPAXPXXPXRPPPAXXP 749
           P PPPP     P +PPP   P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 841 PXVXAGVXXXPXPPPPAXPXXPXRPPPA 758
           P + AG+   P P PPA P  P  P PA
Sbjct: 457 PPLPAGMPAAP-PLPPAAPAPPPAPAPA 483


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = +3

Query: 687 GGRXAXGRAXGRXXGXXXAXXGXXAGGGRXGXXGXAGGGGXGXXXTPAXTXGG 845
           G R   G + G   G      G   GGGR G  G   GG  G         GG
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGF--GGGRGGARGGGRGGARGGRGGRGGARGG 56


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
 Frame = +3

Query: 687 GGRXAXGRAXGRXXGXXXAXXGXXAG-GGRXGXXGXAGGGGXGXXXTPAXTXGG 845
           GG    G   G   G      G   G GG  G  G  GGG  G    P    GG
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = -3

Query: 844 PPXVXAGVXXXPXPPPP----AXPXXPXRPPPA 758
           PP         P PPPP    A P  P  PPPA
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.138    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,583
Number of Sequences: 5004
Number of extensions: 13313
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 814742980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)