Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E12
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    32   0.66 
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   4.6  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   6.1  

>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 800 GXGXXXXGRAXGGXGGWGXGXGYXWG 723
           G G    G   GG GGWG G  + WG
Sbjct: 245 GPGGWGGGGRGGGWGGWGRGSRWGWG 270


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -1

Query: 800 GXGXXXXGRAXGGXGGWGXGXGYXWGTXXG 711
           G G    GR  GG  GWG G G  WG   G
Sbjct: 49  GGGGPGWGRGGGG-SGWGGGRGGGWGNNGG 77


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 800 GXGXXXXGRAXGGXGGWGXGXGYXWGTXXGQ 708
           G G    G   GG GGWG   G  WG   G+
Sbjct: 34  GWGGNRWG-GGGGPGGWGNNGGGGWGRGGGR 63


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 386 YILKLTSRLNNXSIYGSRFKDHFPIALAEPRTSIAGPALTMP 261
           ++L L+  L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,080
Number of Sequences: 27780
Number of extensions: 193450
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)