Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E11
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.74 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 770 PPXXPXPPPPXPXLFLXGXSPPP 838
           PP  P PPPP P        PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 782 PXPPPPXPXLFLXGXSPPP 838
           P PPPP P +   G  PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 755 PTRXXPPXXPXPPPPXPXLFLXGXSPPP 838
           P     P    PPPP P   + G  PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = +2

Query: 770 PPXXPXPPPPXPXLFLXGXSP-----PPXSXXAXPXLXXRXPNXXSTPIXPPA 913
           PP  P PP P   L     +P     PP S  + P +  + P   S+ + PPA
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS-LPPPA 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,364
Number of Sequences: 5004
Number of extensions: 20054
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)