Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E10
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 146 4e-36
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 146 4e-36
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 1.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 2.0
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 3.6
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 4.7
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 6.2
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 8.2
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 146 bits (354), Expect = 4e-36
Identities = 68/98 (69%), Positives = 79/98 (80%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVR 376
D+GNFSWGSE ++KTRII V Y+ SNNEL RT TL +
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98
Score = 35.1 bits (77), Expect = 0.013
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRK 453
++AIV +DA PFR YE+HY + +G K
Sbjct: 98 KSAIVQIDAAPFRVWYETHYGILMGSK 124
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 146 bits (354), Expect = 4e-36
Identities = 68/98 (69%), Positives = 79/98 (80%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVR 376
D+GNFSWGSE ++KTRII V Y+ SNNEL RT TL +
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98
Score = 35.1 bits (77), Expect = 0.013
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRK 453
++AIV +DA PFR YE+HY + +G K
Sbjct: 98 KSAIVQIDAAPFRVWYETHYGILMGSK 124
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 95 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 268
RD +K + G K+ + EL +N + Q+ + S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 269 GNFSWGSECSTRKTRI 316
G+ E + K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 98 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 259
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +2
Query: 98 DHWHKRRATGGKRAPIRKKRKY-----ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
D W +A G +PIR+ ++Y + +PA R H R K R + +
Sbjct: 758 DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR---DNYHKQNKRNREAKERGIGI 814
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNN 346
N S RK R + A NN
Sbjct: 815 KV-NSELKSAVEIRKARELKEKRLAKNN 841
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 370 CQNAIVVVDATPFRQXYESHYTLPLGRKKGSEN 468
C N +++ F + HY LP RK+ EN
Sbjct: 105 CSNCRAFINSNAFGKFKGQHYCLPCLRKQDEEN 137
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 303 AKPVSLMLCIMHLTMNXCVQRPLSECNCCSRCNS 404
+KPVSL + +T N + + CN C N+
Sbjct: 295 SKPVSLCVYPEKITFNWLTEGTVDSCNLCKLSNT 328
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 71 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 187
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,876
Number of Sequences: 5004
Number of extensions: 54693
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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