Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E10
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 149 3e-36
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 149 4e-36
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.40
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 3.8
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204... 29 3.8
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 29 3.8
04_03_0668 - 18516366-18516639,18517348-18517379,18517939-185179... 29 3.8
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396... 29 6.6
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 6.6
01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628 29 6.6
01_02_0013 + 10162478-10163581 28 8.7
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 149 bits (361), Expect = 3e-36
Identities = 72/99 (72%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 259
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 260 LDTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVR 376
LDTGN+SWGSE TRKTRI+DVVYNASNNEL RT+TLV+
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVK 99
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKK 456
++AIV VDA PF+Q Y +HY + +GRKK
Sbjct: 99 KSAIVQVDAAPFKQWYLTHYGVDIGRKK 126
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +2
Query: 584 TGRLLACVASPPGQC 628
+GRLLAC++S PGQC
Sbjct: 194 SGRLLACISSRPGQC 208
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 149 bits (360), Expect = 4e-36
Identities = 72/99 (72%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 259
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 260 LDTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVR 376
LDTGN+SWGSE TRKTRI+DVVYNASNNEL RT+TLV+
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVK 99
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKK 456
++AIV VDA PF+Q Y +HY + +GRKK
Sbjct: 99 KSAIVQVDAAPFKQWYLTHYGVDIGRKK 126
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +2
Query: 584 TGRLLACVASPPGQC 628
+GRLLAC++S PGQC
Sbjct: 177 SGRLLACISSRPGQC 191
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.40
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +2
Query: 155 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 289
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 110 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 259
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 110 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 244
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
>11_06_0223 -
21419128-21419397,21419493-21419747,21420243-21420414,
21420530-21420757,21420916-21421049,21421309-21421392,
21421554-21421760,21421871-21422203,21422343-21422449,
21422823-21422988,21423127-21423230,21423347-21423507,
21423595-21424495,21424642-21424732,21424837-21425127,
21425491-21425575,21425665-21425747,21427653-21427773,
21427785-21428260
Length = 1422
Score = 29.5 bits (63), Expect = 3.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 820 GLIXSPXDXKPWWXWG 867
G + S D KPWW WG
Sbjct: 731 GFLISRNDIKPWWIWG 746
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 29.5 bits (63), Expect = 3.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 820 GLIXSPXDXKPWWXWG 867
G + S D KPWW WG
Sbjct: 702 GFLVSRKDIKPWWIWG 717
>04_03_0668 -
18516366-18516639,18517348-18517379,18517939-18517983,
18518454-18518681
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 495 HQEEKSKTARK---YLGKXRLAKVEGALKEHXTRGVCW 599
H+EEK + AR+ Y+ + R A++EG +E + V W
Sbjct: 140 HREEKRRAARRREQYVAEARAARLEGLKREIRGKAVDW 177
>07_03_1174 +
24538522-24538682,24539229-24539430,24539529-24539675,
24539832-24539944,24540580-24540791,24541194-24541258,
24541581-24541751,24542543-24542887,24542980-24543173,
24543292-24543448,24543946-24544010,24544166-24544331
Length = 665
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 357 VQRPLSECNCCSRCNSIQAVX*VALYVASWEEEGERKLTEAEESYYHQEEKSKTARKY 530
+ R LS SRC ++A Y+AS + KL + S + ++K ARK+
Sbjct: 42 IWRKLSADGVASRCMIMKAKEAEDKYIASVHSQNHIKLMRSISSKEYDSRRNKIARKF 99
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 192 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 350
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628
Length = 366
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 136 TFPTGGPSLMPVIPT--NTHLSWVKKENTRHQILRXFPINLKVV 11
T PT P+L+PV T +++ V + T H+IL+ P+N K V
Sbjct: 258 TMPTFYPALIPVPLTLWPPNVANVGESGTNHEILKPTPVNGKEV 301
>01_02_0013 + 10162478-10163581
Length = 367
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 234 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNXCVQRPL 371
E +S RC P+ G R + A SL + ++HL C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,771
Number of Sequences: 37544
Number of extensions: 399006
Number of successful extensions: 1137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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