Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E10
(886 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 194 4e-49
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 194 4e-49
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 194 4e-49
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 194 4e-49
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 134 5e-31
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 30 9.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (473), Expect = 4e-49
Identities = 100/182 (54%), Positives = 115/182 (63%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVRXXXXXXXXXHSGSXMSXXXXXX 442
D GNFSWGSEC TRKTRIIDVVYNASNNEL RTKTLV+
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 443 XXXXXXAKTD*G*GKLLSPRREVKDSXKILGQATSC*G*GCSKRAXHTGRLLACVASPPG 622
AK ++L+ +R K K + + + G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 623 QC 628
QC
Sbjct: 181 QC 182
Score = 57.6 bits (133), Expect = 6e-08
Identities = 26/48 (54%), Positives = 37/48 (77%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKKGSEN*LRLRKAIITKKRSQR 516
+N IV++D+TP+RQ YESHY LPLGRKKG++ + I+ KKRS++
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKL-TPEEEEILNKKRSKK 144
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (473), Expect = 4e-49
Identities = 100/182 (54%), Positives = 115/182 (63%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVRXXXXXXXXXHSGSXMSXXXXXX 442
D GNFSWGSEC TRKTRIIDVVYNASNNEL RTKTLV+
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 443 XXXXXXAKTD*G*GKLLSPRREVKDSXKILGQATSC*G*GCSKRAXHTGRLLACVASPPG 622
AK ++L+ +R K K + + + G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 623 QC 628
QC
Sbjct: 181 QC 182
Score = 57.6 bits (133), Expect = 6e-08
Identities = 26/48 (54%), Positives = 37/48 (77%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKKGSEN*LRLRKAIITKKRSQR 516
+N IV++D+TP+RQ YESHY LPLGRKKG++ + I+ KKRS++
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKL-TPEEEEILNKKRSKK 144
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (473), Expect = 4e-49
Identities = 100/182 (54%), Positives = 115/182 (63%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVRXXXXXXXXXHSGSXMSXXXXXX 442
D GNFSWGSEC TRKTRIIDVVYNASNNEL RTKTLV+
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 443 XXXXXXAKTD*G*GKLLSPRREVKDSXKILGQATSC*G*GCSKRAXHTGRLLACVASPPG 622
AK ++L+ +R K K + + + G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 623 QC 628
QC
Sbjct: 181 QC 182
Score = 57.6 bits (133), Expect = 6e-08
Identities = 26/48 (54%), Positives = 37/48 (77%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKKGSEN*LRLRKAIITKKRSQR 516
+N IV++D+TP+RQ YESHY LPLGRKKG++ + I+ KKRS++
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKL-TPEEEEILNKKRSKK 144
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (473), Expect = 4e-49
Identities = 100/182 (54%), Positives = 115/182 (63%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVRXXXXXXXXXHSGSXMSXXXXXX 442
D GNFSWGSEC TRKTRIIDVVYNASNNEL RTKTLV+
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 443 XXXXXXAKTD*G*GKLLSPRREVKDSXKILGQATSC*G*GCSKRAXHTGRLLACVASPPG 622
AK ++L+ +R K K + + + G+LLAC+AS PG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 623 QC 628
QC
Sbjct: 181 QC 182
Score = 57.6 bits (133), Expect = 6e-08
Identities = 26/48 (54%), Positives = 37/48 (77%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKKGSEN*LRLRKAIITKKRSQR 516
+N IV++D+TP+RQ YESHY LPLGRKKG++ + I+ KKRS++
Sbjct: 98 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKL-TPEEEEILNKKRSKK 144
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 134 bits (323), Expect = 5e-31
Identities = 83/182 (45%), Positives = 98/182 (53%)
Frame = +2
Query: 83 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVRXXXXXXXXXHSGSXMSXXXXXX 442
C TRKTRIIDVVYNASNNEL RTKTLV+
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 443 XXXXXXAKTD*G*GKLLSPRREVKDSXKILGQATSC*G*GCSKRAXHTGRLLACVASPPG 622
AK ++L+ +R K K + + + G+LLAC+AS PG
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 160
Query: 623 QC 628
QC
Sbjct: 161 QC 162
Score = 57.6 bits (133), Expect = 6e-08
Identities = 26/48 (54%), Positives = 37/48 (77%)
Frame = +1
Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKKGSEN*LRLRKAIITKKRSQR 516
+N IV++D+TP+RQ YESHY LPLGRKKG++ + I+ KKRS++
Sbjct: 78 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKL-TPEEEEILNKKRSKK 124
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 30.3 bits (65), Expect = 9.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 587 GRLLACVASPPGQC 628
G+LLAC+AS PGQC
Sbjct: 41 GKLLACIASRPGQC 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,957,026
Number of Sequences: 237096
Number of extensions: 2264935
Number of successful extensions: 5117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5077
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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