Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E10
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   153   2e-37
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    30   2.5  
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    30   2.5  
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    30   2.5  
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    30   2.5  
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    30   2.5  
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    30   2.5  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  153 bits (371), Expect = 2e-37
 Identities = 83/181 (45%), Positives = 103/181 (56%)
 Frame = +2

Query: 83  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVRXXXXXXXXXHSGSXMSXXXXXX 442
           D+GNFSW SE +TRKTRI+D +YNA+NNEL RTKTLV+                      
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 443 XXXXXXAKTD*G*GKLLSPRREVKDSXKILGQATSC*G*GCSKRAXHTGRLLACVASPPG 622
                 AK       +L+ +R      K   +  +           +TGRLLA ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180

Query: 623 Q 625
           Q
Sbjct: 181 Q 181



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = +1

Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKKGSEN*LRLRKAIITKKRS 510
           + AI+ VDA PFRQ YE+HY LPL RKK ++       AI+ KKRS
Sbjct: 98  KGAIISVDAAPFRQWYEAHYALPLARKKNAKL-SEEDNAILNKKRS 142


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 251 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 352
           A+++D G+F+WGS+   RK  + D+ +N    +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 251 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 352
           A+++D G+F+WGS+   RK  + D+ +N    +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 251 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 352
           A+++D G+F+WGS+   RK  + D+ +N    +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 251 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 352
           A+++D G+F+WGS+   RK  + D+ +N    +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 251 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 352
           A+++D G+F+WGS+   RK  + D+ +N    +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 251 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 352
           A+++D G+F+WGS+   RK  + D+ +N    +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,338
Number of Sequences: 27780
Number of extensions: 324818
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)