Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E10
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   209   2e-56
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.9  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  209 bits (511), Expect = 2e-56
 Identities = 106/182 (58%), Positives = 121/182 (66%)
 Frame = +2

Query: 83  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 262
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 263 DTGNFSWGSECSTRKTRIIDVVYNASNNELXRTKTLVRXXXXXXXXXHSGSXMSXXXXXX 442
           DTGNFSWGSEC+TRKTRIIDVVYNASNNEL RTKTLV+                      
Sbjct: 61  DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 120

Query: 443 XXXXXXAKTD*G*GKLLSPRREVKDSXKILGQATSC*G*GCSKRAXHTGRLLACVASPPG 622
                 AK      ++L+ +R  K   K   +          +    TGR+LAC++S PG
Sbjct: 121 LGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPG 180

Query: 623 QC 628
           QC
Sbjct: 181 QC 182



 Score = 59.7 bits (138), Expect = 4e-11
 Identities = 26/48 (54%), Positives = 36/48 (75%)
 Frame = +1

Query: 373 QNAIVVVDATPFRQXYESHYTLPLGRKKGSEN*LRLRKAIITKKRSQR 516
           +NAIV +DATPFRQ YE HY LPLGRK+G++      + ++ KKRS++
Sbjct: 98  KNAIVTIDATPFRQWYEGHYVLPLGRKRGAKL-TEAEEEVLNKKRSKK 144



 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +3

Query: 432 YVASWEEEGERKLTEAEESYYHQEEKSKTARKYLGKXRLAKVEGALKEHXTRG 590
           YV     +   KLTEAEE   +++   K   KY  + R AKVE AL+E    G
Sbjct: 117 YVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATG 169


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = -2

Query: 444 KRQRIMRLIXLPEWSCIYYNNCILTRVFVRXNSLLDALYTTSMIRVLRVEHSDPQEK 274
           K Q +  L+ LP W       CIL    +     + +L     + ++R   + P E+
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQISSLIIPGNVNMIRTHSTXPXEE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,511
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)