Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E08
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142...   174   7e-44
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212...   174   7e-44
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314...   174   7e-44
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845     60   2e-09
03_06_0607 + 35037467-35038624                                         30   2.7  
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531...    29   4.8  
02_02_0500 - 10993675-10994067,10994434-10995738                       29   6.3  

>10_08_0319 -
           16712572-16712654,16712756-16712797,16713955-16714239,
           16714346-16714358
          Length = 140

 Score =  174 bits (424), Expect = 7e-44
 Identities = 78/96 (81%), Positives = 92/96 (95%)
 Frame = +2

Query: 140 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 319
           A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM++ATVKKGKP+LRKKVMPAV++R
Sbjct: 24  ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVR 83

Query: 320 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
           QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 84  QRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 119



 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
 Frame = +3

Query: 69  MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
           MSKRGRGGSAG KFR+SLG P     + A  T  + + + S+  + K          +G 
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGI-KGRLNRLPSACVGD 59

Query: 249 *LWPQSKRVNLNSGKR*CRQ---WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK*RARP 419
            +    K+   +  K+                +GV  Y      + V+    + + +   
Sbjct: 60  MVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVN---PKGEMKGSA 116

Query: 420 SQGPVAKECADLWPR 464
             GP+ KECADLWPR
Sbjct: 117 ITGPIGKECADLWPR 131


>03_01_0276 +
           2124538-2124550,2124678-2124962,2126813-2126854,
           2126943-2127025
          Length = 140

 Score =  174 bits (424), Expect = 7e-44
 Identities = 78/96 (81%), Positives = 92/96 (95%)
 Frame = +2

Query: 140 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 319
           A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM++ATVKKGKP+LRKKVMPAV++R
Sbjct: 24  ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVR 83

Query: 320 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
           QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 84  QRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 119



 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
 Frame = +3

Query: 69  MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
           MSKRGRGGSAG KFR+SLG P     + A  T  + + + S+  + K          +G 
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGI-KGRLNRLPSACVGD 59

Query: 249 *LWPQSKRVNLNSGKR*CRQ---WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK*RARP 419
            +    K+   +  K+                +GV  Y      + V+    + + +   
Sbjct: 60  MVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVN---PKGEMKGSA 116

Query: 420 SQGPVAKECADLWPR 464
             GP+ KECADLWPR
Sbjct: 117 ITGPIGKECADLWPR 131


>02_05_1201 +
           34929577-34929589,34930252-34930587,34931378-34931419,
           34931630-34931712
          Length = 157

 Score =  174 bits (424), Expect = 7e-44
 Identities = 78/96 (81%), Positives = 92/96 (95%)
 Frame = +2

Query: 140 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 319
           A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM++ATVKKGKP+LRKKVMPAV++R
Sbjct: 41  ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVR 100

Query: 320 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
           QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 101 QRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 136



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
 Frame = +3

Query: 81  GRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT*LWP 260
           GRGGSAG KFR+SLG P     + A  T  + + + S+  + K          +G  +  
Sbjct: 22  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGI-KGRLNRLPSACVGDMVMA 80

Query: 261 QSKRVNLNSGKR*CRQW---SSGSGNHSEGVMEYLYTLRTMRVS*SITRAK*RARPSQGP 431
             K+   +  K+                +GV  Y      + V+    + + +     GP
Sbjct: 81  TVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVN---PKGEMKGSAITGP 137

Query: 432 VAKECADLWPR 464
           + KECADLWPR
Sbjct: 138 IGKECADLWPR 148


>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
          Length = 170

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
 Frame = +2

Query: 146 INCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVI 316
           +   DN+GAK   V+ +Q ++G+      A  GD I+ +VK+ +P  + K   V+  VV+
Sbjct: 58  LKVVDNSGAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVV 111

Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
           R      R DG  I F+DNA V+VNNKGE+ G+ + G
Sbjct: 112 RAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFG 148


>03_06_0607 + 35037467-35038624
          Length = 385

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
 Frame = +1

Query: 97  RERNSVSPWXLPXGSSNQLRRQHRGKESVCDRC--PRYQ-----RSPEQTAGGRFWGHDC 255
           RE  S  P   P    N  RR H  K   C RC   R+      R+ E+  G   W   C
Sbjct: 230 REHKSFQPLKTPTCVKNHYRRSHCDKSFTCRRCNVKRFSVVADLRTHEKHCGRDRWVCSC 289

Query: 256 GHS 264
           G S
Sbjct: 290 GTS 292


>07_03_0263 -
           15951011-15951818,15952009-15952526,15952949-15953197,
           15953270-15953857
          Length = 720

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 51  NFXYNKMSKRGRGGSAGAKFR--ISLGSPXWEQ*STAPTTQGQR 176
           NF  +  +  GRGG  G  F   +S G   W+  S+A T  G+R
Sbjct: 94  NFGNSSSAGAGRGGGNGGAFPGGLSSGRGVWQHSSSAATALGRR 137


>02_02_0500 - 10993675-10994067,10994434-10995738
          Length = 565

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -1

Query: 426 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 259
           P   EP I+   + ++PA+     +T S + NG+  +M+T    G+ F + SSG   + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284

Query: 258 ATIMSPEPAA 229
              +  EP A
Sbjct: 285 FKPIDEEPMA 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,627,108
Number of Sequences: 37544
Number of extensions: 470167
Number of successful extensions: 1102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)