Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E08
(864 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 186 1e-46
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 185 2e-46
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 185 2e-46
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 185 2e-46
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 185 2e-46
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 185 2e-46
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 185 2e-46
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 185 2e-46
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 104 5e-22
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 186 bits (452), Expect = 1e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVI 82
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Score = 50.4 bits (115), Expect = 8e-06
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
MSKRGRGGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV 57
Query: 249 *LWPQSKRVNLNSGKR*CRQ--------WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK 404
+ GK R+ S +GV Y + V+ + +
Sbjct: 58 ---GDMVMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGE 111
Query: 405 *RARPSQGPVAKECADLWPR 464
+ GPVAKECADLWPR
Sbjct: 112 MKGSAITGPVAKECADLWPR 131
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 185 bits (451), Expect = 2e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI 82
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Score = 50.4 bits (115), Expect = 8e-06
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
MSKRGRGGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV 57
Query: 249 *LWPQSKRVNLNSGKR*CRQ--------WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK 404
+ GK R+ S +GV Y + V+ + +
Sbjct: 58 ---GDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGE 111
Query: 405 *RARPSQGPVAKECADLWPR 464
+ GPVAKECADLWPR
Sbjct: 112 MKGSAITGPVAKECADLWPR 131
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 185 bits (451), Expect = 2e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI 82
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Score = 50.4 bits (115), Expect = 8e-06
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
MSKRGRGGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV 57
Query: 249 *LWPQSKRVNLNSGKR*CRQ--------WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK 404
+ GK R+ S +GV Y + V+ + +
Sbjct: 58 ---GDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGE 111
Query: 405 *RARPSQGPVAKECADLWPR 464
+ GPVAKECADLWPR
Sbjct: 112 MKGSAITGPVAKECADLWPR 131
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 185 bits (451), Expect = 2e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI 82
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Score = 50.4 bits (115), Expect = 8e-06
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
MSKRGRGGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV 57
Query: 249 *LWPQSKRVNLNSGKR*CRQ--------WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK 404
+ GK R+ S +GV Y + V+ + +
Sbjct: 58 ---GDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGE 111
Query: 405 *RARPSQGPVAKECADLWPR 464
+ GPVAKECADLWPR
Sbjct: 112 MKGSAITGPVAKECADLWPR 131
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 185 bits (451), Expect = 2e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI 82
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Score = 50.4 bits (115), Expect = 8e-06
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
MSKRGRGGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV 57
Query: 249 *LWPQSKRVNLNSGKR*CRQ--------WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK 404
+ GK R+ S +GV Y + V+ + +
Sbjct: 58 ---GDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGE 111
Query: 405 *RARPSQGPVAKECADLWPR 464
+ GPVAKECADLWPR
Sbjct: 112 MKGSAITGPVAKECADLWPR 131
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 185 bits (451), Expect = 2e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI 82
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Score = 50.4 bits (115), Expect = 8e-06
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
MSKRGRGGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV 57
Query: 249 *LWPQSKRVNLNSGKR*CRQ--------WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK 404
+ GK R+ S +GV Y + V+ + +
Sbjct: 58 ---GDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGE 111
Query: 405 *RARPSQGPVAKECADLWPR 464
+ GPVAKECADLWPR
Sbjct: 112 MKGSAITGPVAKECADLWPR 131
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 185 bits (451), Expect = 2e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 17 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI 76
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 77 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 113
Score = 38.3 bits (85), Expect = 0.036
Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Frame = +3
Query: 87 GGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT*LWPQS 266
GGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV---GDM 54
Query: 267 KRVNLNSGKR*CRQW--------SSGSGNHSEGVMEYLYTLRTMRVS*SITRAK*RARPS 422
+ GK R+ S +GV Y + V+ + + +
Sbjct: 55 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGEMKGSAI 111
Query: 423 QGPVAKECADLWPR 464
GPVAKECADLWPR
Sbjct: 112 TGPVAKECADLWPR 125
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 185 bits (451), Expect = 2e-46
Identities = 86/97 (88%), Positives = 94/97 (96%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVI
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVI 82
Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
RQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83 RQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITG 119
Score = 50.4 bits (115), Expect = 8e-06
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSPXWEQ*STAPTTQGQRICM*SLSKVSKVA*TDCRRPVLGT 248
MSKRGRGGS+GAKFRISLG P + A T + + + S+ + R P G
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRL---NRLPAAGV 57
Query: 249 *LWPQSKRVNLNSGKR*CRQ--------WSSGSGNHSEGVMEYLYTLRTMRVS*SITRAK 404
+ GK R+ S +GV Y + V+ + +
Sbjct: 58 ---GDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN---NKGE 111
Query: 405 *RARPSQGPVAKECADLWPR 464
+ GPVAKECADLWPR
Sbjct: 112 MKGSAITGPVAKECADLWPR 131
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 104 bits (249), Expect = 5e-22
Identities = 47/53 (88%), Positives = 52/53 (98%)
Frame = +2
Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK 295
GAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKK
Sbjct: 23 GAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75
Score = 42.7 bits (96), Expect = 0.002
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +3
Query: 69 MSKRGRGGSAGAKFRISLGSP 131
MSKRGRGGS+GAKFRISLG P
Sbjct: 1 MSKRGRGGSSGAKFRISLGLP 21
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,653,882
Number of Sequences: 237096
Number of extensions: 2520670
Number of successful extensions: 4317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4317
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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