Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E08
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   173   1e-43
AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical ...    32   0.46 
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    30   2.4  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    30   2.4  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  173 bits (422), Expect = 1e-43
 Identities = 81/97 (83%), Positives = 89/97 (91%)
 Frame = +2

Query: 137 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 316
           GAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVI
Sbjct: 23  GAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVI 82

Query: 317 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 427
           RQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 83  RQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITG 119



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +3

Query: 69  MSKRGRGGSAGAKFRISLGSP 131
           MSKRGRGG++GAKFRISLG P
Sbjct: 1   MSKRGRGGASGAKFRISLGLP 21



 Score = 35.1 bits (77), Expect = 0.065
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 426 GPVAKECADLWPR 464
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical
           protein Y49A10A.2 protein.
          Length = 232

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 127 LPXGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFWGHDCGHS 264
           +P G+   L R +R K+S  ++  +  +  ++T GG+ WG  CG +
Sbjct: 46  VPQGAIFALHRDYRFKKST-EQHTKAIKEAKETLGGKLWGSQCGRA 90


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 262 CGHNHVPRTGRRQSVQATFDTLDSDH--IQILCPCVVGAVDYCSXLGXPREIR 110
           CG N V R  R   V    D LD++H  + I CP   GA  Y S L  P+  R
Sbjct: 90  CGENKVERATRDGHV--CLDVLDANHNTLAITCPLPEGA-GYTSALSDPKHPR 139


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
           363, isoform b protein.
          Length = 2692

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 516 LXNLKRIFKL*SSRLRQYAATDQHILWLQAPVMAEPFISPLLLTMTPAL--SSKYINTPS 343
           L  L ++ +   +RL Q++A     L  Q+P    P++  L++ M P L    KY    +
Sbjct: 737 LETLSQMQQSGQARLEQHSAKMIAQLAKQSPKFMRPYVGSLMIAMIPKLRNDQKYAEVTA 796

Query: 342 RLLN 331
           ++LN
Sbjct: 797 QVLN 800


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
           363, isoform a protein.
          Length = 2695

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 516 LXNLKRIFKL*SSRLRQYAATDQHILWLQAPVMAEPFISPLLLTMTPAL--SSKYINTPS 343
           L  L ++ +   +RL Q++A     L  Q+P    P++  L++ M P L    KY    +
Sbjct: 737 LETLSQMQQSGQARLEQHSAKMIAQLAKQSPKFMRPYVGSLMIAMIPKLRNDQKYAEVTA 796

Query: 342 RLLN 331
           ++LN
Sbjct: 797 QVLN 800


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 231 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 139
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,026
Number of Sequences: 27780
Number of extensions: 377940
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)