Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E07
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.052
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.64
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.84
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.5
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 7.9
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 7.9
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.052
Identities = 26/80 (32%), Positives = 35/80 (43%)
Frame = +1
Query: 490 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPS 669
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTPT 358
Query: 670 NTTGTLKPSMYXKPXPCSSS 729
T S P P S+S
Sbjct: 359 -VPPTSTSSTSTPPPPASTS 377
Score = 31.9 bits (69), Expect = 0.12
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 490 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 666
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 667 S-NTTGTLKPSMYXKPXPCSSS 729
+ T T S+ P SS+
Sbjct: 250 TVPPTSTSSTSIPIPPTSTSST 271
Score = 31.5 bits (68), Expect = 0.16
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 490 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP-LT 663
+TP P S S+P P T+ + S P T ST + + + S+T + P +
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 664 PSNTTGTLKPSMYXKPXPCSSS 729
P++T+ T P P P S+S
Sbjct: 307 PTSTSSTSTP-----PPPASTS 323
Score = 31.1 bits (67), Expect = 0.21
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 490 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTV-IAPLTP 666
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 667 SNTTGT 684
++ T
Sbjct: 415 PTSSST 420
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 481 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 657
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 658 LTPSNTTGTLKPS 696
T S++T T S
Sbjct: 658 STSSSSTATSSTS 670
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 572 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 471
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 216 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 359
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 490 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTN-ST*SSITRKVLXMTVSSTVIAPLTP 666
V P + + ++PP T+ T+ + PP T+ +T ++ + ++TV+ P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 667 SNTTGTLKPSMY 702
NTT + P+ +
Sbjct: 128 VNTTTVVPPTTH 139
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 484 HSVTPKTKPARKSPGSLPPCWKTTEF--TSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 657
H+ T T P S + TT T+ + PP T+ ++ ++TV+ P
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPP 136
Query: 658 LTPSNTTGTLKPSMY 702
T NTT + P+ +
Sbjct: 137 TTHVNTTTVVPPTTH 151
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 550 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLKP 693
+T TS PP T+ ++ T ++T + P T NTT T P
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP 110
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 183 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 299
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 547 KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLK--PSMYXKPXPC 720
+TTE T+ P T ++ S T ++ T T I P+ P N + ++ P+ P P
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPTTSFTPGPG 909
Query: 721 SSSY 732
S Y
Sbjct: 910 GSGY 913
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 420 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 512
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 319 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 140
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 139 EASAHTARTKA 107
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,082
Number of Sequences: 5004
Number of extensions: 67168
Number of successful extensions: 260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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