Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E06
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    29   0.87 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.7  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   4.6  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   4.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   8.1  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    26   8.1  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   8.1  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +3

Query: 435 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 590
           +++S   P+  DEG   D +  + RF +     + I     ++  V + +  +  H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364

Query: 591 DTKSVYREYNREFLLXKGTNPEXIKS 668
             KSV RE NR + L K  NP  +++
Sbjct: 365 IIKSVIREANRVYHLWKDCNPYFLEN 390


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 237 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 326
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +1

Query: 328 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 504
           S  NS T  AT +S   L+  +  +  +A S P S V     T  S  T +T+ ++S   
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481

Query: 505 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 630
            SAS  P  S+   S T+  STP T  N   +    +T  S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 561 LVHAKHEEKSDTKSVYREYNREFLLXKGTNPEXIKSSLSRDGVLTVEA-PLPQL 719
           L H  HE   D +S+YR   R  L  +    E + S  S + +LTV + P P L
Sbjct: 49  LAHKVHE---DVESIYRRLERLQLCKRNEEEEMLNSDAS-EAMLTVSSVPSPTL 98


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 75  MISTVLSAVECVLFQ*NVFTRERFSVCLVSTIS 173
           MIS  + A+  ++ +  VF  E F V L+ST++
Sbjct: 840 MISATIIAISSIVMEYKVFISEPFLVQLISTLN 872


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 507  VSQYTPEEIVVKTVDNKLLVHAKHEEKS-DTKSVYREYNREFLLXKGTNPEXIKSSL 674
            V   TP + V    DNK LV  K  EK  + +S   E  +E    K T PE  + +L
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRK-TTPEGNRRAL 1402


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 613 NTTGSFCXPREQILRXLSLRCPGTVCLPWKRHCHNSPS 726
           NT+ +       +L  LS  CPG +C   K H +  P+
Sbjct: 198 NTSSNSGINENAVLPILSSSCPGWICYVEKTHSNLIPN 235


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 688 CLPWKRHCHNSPSRTGTFLXRSTERSHH 771
           CL W RH  +S SR+G         ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,058
Number of Sequences: 5004
Number of extensions: 60686
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)