Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E05
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411...    29   5.0  
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    29   5.0  
07_03_0120 + 13653668-13654384                                         29   6.6  
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099...    29   6.6  
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156           28   8.7  

>07_01_0552 +
           4109906-4109983,4110422-4110484,4110496-4110525,
           4110567-4110621,4111046-4111143,4112259-4112417,
           4112518-4112577,4113436-4113624,4113749-4113802,
           4113959-4114045,4114149-4114881,4115282-4115373,
           4115739-4115812,4116097-4116199,4116342-4117204,
           4117649-4117724,4117861-4117972,4118092-4118168,
           4118272-4118352,4118710-4118789,4118860-4118875
          Length = 1059

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 549 LTSITKIDAQVXXGETRQDYKIPXVSPWXLLVRSPVPTLPLT 674
           L S+  ID+Q      RQ+Y +  V    +L   P P LPL+
Sbjct: 512 LQSLLTIDSQFVQSADRQEYVLCAVKGLIILATFPEPRLPLS 553


>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +2

Query: 641 RALSCSDPAAYGYCPPFS 694
           RA SCSDPAA G  PP S
Sbjct: 6   RASSCSDPAAAGLVPPKS 23


>07_03_0120 + 13653668-13654384
          Length = 238

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 638 PRALSCSDPAAYGYCPPFSLRERALLIXHAVXISV 742
           P AL     AA G CPP + R+ A+++ +AV +S+
Sbjct: 15  PGALRDKLHAASGSCPPANYRDGAVVLENAVLLSL 49


>06_03_0705 -
           23707987-23708295,23708532-23708573,23709772-23709957,
           23710112-23710222,23710337-23710408,23710499-23710747,
           23711052-23711135,23711271-23711456,23711540-23711764
          Length = 487

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 388 QPNDRAQRVSERGSGRAPKY---ANRLSPRVGRFIKCRKNLP 272
           QP D   RVS+     +PK    + R SPR G   + RKN P
Sbjct: 65  QPEDVKPRVSKGSQSHSPKVTTKSQRQSPRSGDKSQARKNSP 106


>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
          Length = 598

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 540 PPPLTSI--TKIDAQVXXGETRQDYKIPXVSPWXLLVRSPVPTLPLTD 677
           PPP  S   T +  Q   G  RQ + +P   PW L++RSP     L D
Sbjct: 291 PPPCWSDLPTDLAGQWRLGALRQ-HPLPPPPPWLLILRSPCVYQSLPD 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,115,547
Number of Sequences: 37544
Number of extensions: 519238
Number of successful extensions: 1226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)