Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_E04
(994 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.034
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.034
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 35 0.078
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 33 0.24
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.32
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.32
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.32
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 0.96
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.96
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.96
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.96
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 30 2.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.9
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.9
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.9
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 3.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.9
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 6.8
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 6.8
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 6.8
U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five) in... 29 6.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 6.8
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 28 9.0
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 28 9.0
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 28 9.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 9.0
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 36.3 bits (80), Expect = 0.034
Identities = 21/58 (36%), Positives = 23/58 (39%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P YP + P PP S GP + PPP P P G P PPPP
Sbjct: 337 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP-------PSRPPAPPSGHGMIPPPPPP 387
Score = 31.9 bits (69), Expect = 0.73
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 862 FPPXRGSPGPXLX*PPPXXXT-SISPRTXPXXXPGGXXXPXPPPP 993
+PP P PPP T ++PR P G P PPPP
Sbjct: 260 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Frame = +1
Query: 826 PXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXP-----XXXPGGXXXPXPPP 990
P P P + P PP +PG PPP P P PG P PPP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
Query: 991 P 993
P
Sbjct: 322 P 322
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 36.3 bits (80), Expect = 0.034
Identities = 21/58 (36%), Positives = 23/58 (39%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P YP + P PP S GP + PPP P P G P PPPP
Sbjct: 347 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP-------PSRPPAPPSGHGMIPPPPPP 397
Score = 31.9 bits (69), Expect = 0.73
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 862 FPPXRGSPGPXLX*PPPXXXT-SISPRTXPXXXPGGXXXPXPPPP 993
+PP P PPP T ++PR P G P PPPP
Sbjct: 270 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Frame = +1
Query: 826 PXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXP-----XXXPGGXXXPXPPP 990
P P P + P PP +PG PPP P P PG P PPP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
Query: 991 P 993
P
Sbjct: 332 P 332
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 35.1 bits (77), Expect = 0.078
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFP-PXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPP 987
P+P P P Y P++P P SP P S+ P P GG P PP
Sbjct: 363 PSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPPPAKPEQPSGGYDAPSPP 419
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 33.5 bits (73), Expect = 0.24
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 841 PEYLGPAFPPXRG---SPGPXLX*PPPXXXTSISPRTXP--XXXPGGXXXPXPP 987
P + A+PP RG +P P + PPP + P P PGG P PP
Sbjct: 152 PRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGPP 205
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 33.5 bits (73), Expect = 0.24
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 841 PEYLGPAFPPXRG---SPGPXLX*PPPXXXTSISPRTXP--XXXPGGXXXPXPP 987
P + A+PP RG +P P + PPP + P P PGG P PP
Sbjct: 152 PRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGPP 205
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.32
Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISP-----RTXPXXXPGGXXXPXP 984
P P P P GP PP G P PPP P P PGG P P
Sbjct: 715 PPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 985 PPP 993
PPP
Sbjct: 774 PPP 776
Score = 33.1 bits (72), Expect = 0.32
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +1
Query: 820 PNPXRPYPEYLG--PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P P G P PP G P PPP P P PGG PPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Frame = +1
Query: 859 AFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGG----XXXPXPPPP 993
A PP G P PPP I+ P PGG P PPPP
Sbjct: 705 ALPPITGGP------PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP 747
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.32
Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISP-----RTXPXXXPGGXXXPXP 984
P P P P GP PP G P PPP P P PGG P P
Sbjct: 715 PPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 985 PPP 993
PPP
Sbjct: 774 PPP 776
Score = 33.1 bits (72), Expect = 0.32
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +1
Query: 820 PNPXRPYPEYLG--PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P P G P PP G P PPP P P PGG PPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Frame = +1
Query: 859 AFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGG----XXXPXPPPP 993
A PP G P PPP I+ P PGG P PPPP
Sbjct: 705 ALPPITGGP------PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP 747
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.32
Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISP-----RTXPXXXPGGXXXPXP 984
P P P P GP PP G P PPP P P PGG P P
Sbjct: 298 PPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Query: 985 PPP 993
PPP
Sbjct: 357 PPP 359
Score = 33.1 bits (72), Expect = 0.32
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +1
Query: 820 PNPXRPYPEYLG--PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P P G P PP G P PPP P P PGG PPPP
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Frame = +1
Query: 859 AFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGG----XXXPXPPPP 993
A PP G P PPP I+ P PGG P PPPP
Sbjct: 288 ALPPITGGP------PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP 330
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.96
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 826 PXRPYPEYLGPA-FPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPP 990
P PYP++ PA PP P + P P P P P P PPP
Sbjct: 98 PPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPP 153
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = +1
Query: 820 PNPXRPYPEYLG---PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPP 990
P P + P G P PP GSP P PP T P P PPP
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 991 P 993
P
Sbjct: 300 P 300
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +1
Query: 835 PYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P G PP GSP P PP SP P P PPPP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP-----PPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = +1
Query: 820 PNPXRPYPEYLG---PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPP 990
P P + P G P PP GSP P PP T P P PPP
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 991 P 993
P
Sbjct: 321 P 321
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +1
Query: 835 PYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P G PP GSP P PP SP P P PPPP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP-----PPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = +1
Query: 820 PNPXRPYPEYLG---PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPP 990
P P + P G P PP GSP P PP T P P PPP
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 991 P 993
P
Sbjct: 306 P 306
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +1
Query: 835 PYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P G PP GSP P PP SP P P PPPP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP-----PPPRAGSPPPPPPP 309
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISP-RTXPXXXPGGXXXPXPPPP 993
P P RP+ GP PP + GP PPP P R P P PPPP
Sbjct: 32 PGPLRPW----GPP-PPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPPP 85
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -3
Query: 989 GGGXGXXXPPGXXXGXVRGEMEVXXXGGG*XXXGPGLPRXGGKAGPRYSG*GRXGFG 819
GGG G PP G G GGG G G GG G G G G G
Sbjct: 67 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGG 123
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -3
Query: 989 GGGXGXXXPPGXXXGXVRGEMEVXXXGGG*XXXGPGLPRXGGKAGPRYSG*GRXGFG 819
GGG G PP G G GGG G G GG G G G G G
Sbjct: 67 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGG 123
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +1
Query: 835 PYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P ++G PP P P PP P P GG P PPP
Sbjct: 307 PPPHFMGRGMPPPFMPPPPHFGMGPP---RGFMPPPHPMMFRGGPYPPFFPPP 356
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +1
Query: 835 PYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P ++G PP P P PP P P GG P PPP
Sbjct: 307 PPPHFMGRGMPPPFMPPPPHFGMGPP---RGFMPPPHPMMFRGGPYPPFFPPP 356
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +1
Query: 850 LGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
L P PP + P P P T I P P P P PPPP
Sbjct: 323 LPPPPPPMKLDPSPQPA-ATPVEITEIPPIISPPAPPPPPPPPPPPPP 369
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +1
Query: 820 PNPXRPYPEYLGPAFPPXRGSP--GPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P P P PP R P P PP S PR P P P PPPP
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPS----PIPPPP 195
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -3
Query: 938 RGEMEVXXXGGG*XXXGPGLPRXGGKAGPRYSG*GRXGFG 819
RG+ E GGG PGL AG YSG G G+G
Sbjct: 200 RGKRETILGGGG----APGLTTVNVHAGAGYSGSGVAGYG 235
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -3
Query: 938 RGEMEVXXXGGG*XXXGPGLPRXGGKAGPRYSG*GRXGFG 819
RG+ E GGG PGL AG YSG G G+G
Sbjct: 273 RGKRETILGGGG----APGLTTVNVHAGAGYSGSGVAGYG 308
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -3
Query: 938 RGEMEVXXXGGG*XXXGPGLPRXGGKAGPRYSG*GRXGFG 819
RG+ E GGG PGL AG YSG G G+G
Sbjct: 273 RGKRETILGGGG----APGLTTVNVHAGAGYSGSGVAGYG 308
>U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform e protein.
Length = 372
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -3
Query: 938 RGEMEVXXXGGG*XXXGPGLPRXGGKAGPRYSG*GRXGFG 819
RG+ E GGG PGL AG YSG G G+G
Sbjct: 273 RGKRETILGGGG----APGLTTVNVHAGAGYSGSGVAGYG 308
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/58 (36%), Positives = 23/58 (39%)
Frame = -3
Query: 992 GGGGXGXXXPPGXXXGXVRGEMEVXXXGGG*XXXGPGLPRXGGKAGPRYSG*GRXGFG 819
GGGG G G G G + GGG G G GG G Y G G G+G
Sbjct: 171 GGGGYGGGGDGGYGGGGFGGG-GMGGYGGGMGGGGYG---GGGMGGGGYGGGGDGGYG 224
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +1
Query: 835 PYPEYLGPAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P P P P + P P PPP P P P P PP
Sbjct: 184 PPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPP 236
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 856 PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P PP G P P L PPP +P P P PP
Sbjct: 91 PFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPP 136
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 856 PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P PP G P P L PPP +P P P PP
Sbjct: 114 PFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPP 159
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 856 PAFPPXRGSPGPXLX*PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P PP G P P L PPP +P P P PP
Sbjct: 364 PFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPP 409
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Frame = +1
Query: 826 PXRPYPEYLGPAFPPX---RGSPGPXLX*-PPPXXXTSISPRTXPXXXPGGXXXPXPPPP 993
P +P P L P PP P P + PP + P P G PPPP
Sbjct: 686 PGQPRPAGLPPGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPP 745
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,892
Number of Sequences: 27780
Number of extensions: 207547
Number of successful extensions: 804
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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