Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E03
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   258   4e-69
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   4.3  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   5.7  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   7.5  
Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  258 bits (632), Expect = 4e-69
 Identities = 125/154 (81%), Positives = 141/154 (91%)
 Frame = +1

Query: 148 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 327
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 328 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 507
           E+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 508 HHARILIRQRHIRVRKXVVNIPSFIVRLDSGQAH 609
           HHARILI+Q HIRVR+ VV++PSFIVRLDS Q H
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDS-QKH 155


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = +1

Query: 256 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 432
           KRE + +  TLA + R+ A  +  L E DP R      +L +    G++      L+ + 
Sbjct: 40  KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98

Query: 433 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKXVVNIPSFIVRLDS 597
            +    F  RRL   +   G+ +S+  A  L+ Q H+R+   +V  P+F+V   S
Sbjct: 99  KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSS 153


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 681 PLRRXFXLTRPGRPPPNGDFREKSMCLPRVQA 586
           P +  F   + G+ P N DF +K +C P V+A
Sbjct: 476 PQKLCFFFRKKGQKPENIDFSKKKLCAPLVRA 507


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 405 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 575
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 568 CSQLACGHEYAFAGSKFWHDG 506
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 571 GCSQLACGHEYAFAGSKFWH 512
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 466 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 332
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical
           protein F31F6.1 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +1

Query: 238 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 405
           E G       +R  + LAR +   R   TL EKD +++F+   G   ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165

Query: 406 KQMKLDYVLGLKIEDFLERRLQTQV-FKAGLAKSIHHARIL 525
              K  +   +  E+   R L T V    G    + H R+L
Sbjct: 166 LFAKCSFEELMPAENV--RSLGTPVELSGGSVTVLPHRRVL 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,005
Number of Sequences: 27780
Number of extensions: 375844
Number of successful extensions: 979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)