Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_E02
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...    98   6e-21
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    66   4e-11
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    66   4e-11
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   7.8  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 43/80 (53%), Positives = 63/80 (78%)
 Frame = +2

Query: 44  LRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKA 223
           +RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+A
Sbjct: 58  MRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRA 116

Query: 224 ILDRRAKGRLAALGKDKGKY 283
           +++R+A GR    G  KGK+
Sbjct: 117 LVERKAAGRSRVTGILKGKH 136


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 27/46 (58%), Positives = 39/46 (84%)
 Frame = +2

Query: 44  LRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 181
           +RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 58  MRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 27/46 (58%), Positives = 39/46 (84%)
 Frame = +2

Query: 44  LRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 181
           +RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 58  MRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 353 FKNFIYLKNYLFKRPPWLWQFPRCI 279
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,700
Number of Sequences: 27780
Number of extensions: 319076
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)