Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D24
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.70 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 775 PPXPXPPPXPP 807
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 783 PXPPPXPPPP 812
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 774 PXXPXPPPXPP 806
           P  P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 789 PPPXPPPPXXXALXPXS 839
           P P PPPP   +  P S
Sbjct: 339 PKPAPPPPPPSSSGPDS 355



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 672 PPPPPPXXPG 701
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 849 PXXPXHPPPPP 881
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 789  PPPXPPPP 812
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 672  PPPPPPXXPG 701
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 21.4 bits (43), Expect(2) = 1.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 658  RXXXXPPPPPP 690
            R    PPPPPP
Sbjct: 1351 RQQQPPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 1.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 676  PPPPPXXPA 702
            PPPPP  P+
Sbjct: 1355 PPPPPPPPS 1363


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = +1

Query: 64  PLIQSGL--KTHXNGKVKNXTNYNQNXXSXKXNGF 162
           P I S L  KT  N    N  NYN N  +   N +
Sbjct: 312 PKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,830
Number of Sequences: 438
Number of extensions: 6594
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)