Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D23
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    30   2.8  
11_06_0546 + 24853167-24853880                                         29   5.0  
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634...    29   6.6  

>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 43  FXDIXVP*LGTRTPL*XEKSK*ISRESYF-SCSLLFSRPHQRNLGNFFKEIERAVARTRD 219
           F DI    +G RTP     S+ +SR S+  +  LL S   Q ++ N   E +RAV   ++
Sbjct: 203 FADILQDNIGRRTPASEHPSRAVSRNSFLDNQELLNSADSQYSMHNDILEAQRAVGNVQN 262


>11_06_0546 + 24853167-24853880
          Length = 237

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 98  NQNEFHENHIFLVRCCFRDRISETLGTSSRKSSAPWRGREMPS 226
           N+NEF E +I +V CC    I  T G + +     W   +M S
Sbjct: 101 NKNEFLELNILIVECCTVTDIRFTDGAAPKLEKIVWSFTKMNS 143


>08_02_0824 +
           21561699-21562415,21563294-21563362,21563424-21563459,
           21564533-21564600,21565259-21565277,21565662-21565763,
           21566173-21566288,21566501-21566595,21568093-21568264,
           21568413-21568493,21569732-21569801,21570106-21570132
          Length = 523

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +2

Query: 173 GTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITA 313
           GTSS  SS P R R  P            Q PP  P   S  +P  A
Sbjct: 10  GTSSSSSSLPSRRRRRPPPRLGRRRGGDDQQPPHPPKASSEALPCAA 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,682
Number of Sequences: 37544
Number of extensions: 305543
Number of successful extensions: 1148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)