Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_D22
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 34 0.18
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.98
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 31 1.7
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 30 2.3
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 30 2.3
02_05_0584 - 30135768-30135790,30136104-30136866 30 3.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.2
02_02_0240 + 8196140-8198248,8198381-8198650 29 6.9
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 28 9.2
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 33.9 bits (74), Expect = 0.18
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = +1
Query: 133 PTLKTPVRVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQG 303
P+ P + + Y P + P V PP Y P +G P N + Y + P G
Sbjct: 376 PSTPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVG 434
Query: 304 RPYFKPTPFPGARG 345
RP P P GA G
Sbjct: 435 RPNSGPPPSYGAGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.98
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 187 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 336
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +2
Query: 773 PXLXNSRPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
P + PPP P PPP PP+ P PPP
Sbjct: 44 PGPPSQPPPPQAMYQAHPQYPMPGSLPPPPPRPPSFAPENALPPSSPPP 92
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 23 IGNSLRFDNFNIFACDNS*SYKNEILHDFRPRSAGYG 133
+G+S FDNF F + ++KN +F P GYG
Sbjct: 256 VGDSCGFDNFPSFGIE---AFKNTFYFNFNPSYVGYG 289
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 788 SRPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
S PPP F P PPP T P + P PPP
Sbjct: 417 SPPPPLPSDAFEQPPPPPEHPPPPESTSPPPPPTSDPPPVPPPP 460
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Frame = +2
Query: 794 PPPAGKXGFXXFLXAPXRFP----PPXXTPPAXGXSGXXXPXXPP 916
PP AG GF L P P P PP+ G SG P P
Sbjct: 85 PPSAGSGGFPFPLPFPLPLPAPGSPAAGAPPSSGSSGFPFPMPSP 129
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 851 PPPXXTPPAXGXSGXXXPXXPPP 919
PPP PPA +G P PPP
Sbjct: 692 PPPPPLPPANRTNGPGVPSAPPP 714
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +2
Query: 773 PXLXNSRPPPAGKXGFXXFLXAPXRFPPP----XXTPPAXGXSGXXXPXXPPP 919
P L N PP G AP PPP TP S P PPP
Sbjct: 643 PSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPP 695
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 28.7 bits (61), Expect = 6.9
Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Frame = +2
Query: 698 LPTXHCPXXFXXPXXXXXXXXXXXX-PXLXNSRPPPAGKXGFXXFLXAPXRFPPPXXTPP 874
+PT H P P P N PPP G+ + P PPP P
Sbjct: 588 MPTMHPPPPPPIPGQPQVIRMPGSMGPMPTNIPPPPPGQNPYMPGPPRPYSMPPPPHMPT 647
Query: 875 -AXGXSGXXXPXXPPP 919
A + P PPP
Sbjct: 648 MATMVNPIGIPQPPPP 663
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 28.3 bits (60), Expect = 9.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 178 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 330
G Y+P R PP+ P Y P G Y +PQG+PY P P+
Sbjct: 247 GETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,839,667
Number of Sequences: 37544
Number of extensions: 501500
Number of successful extensions: 1804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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