Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D22
         (927 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16163-1|CAA34288.1|  218|Homo sapiens SmB /B' autoimmune antige...    32   2.6  
X15892-1|CAA33901.1|  240|Homo sapiens protein ( Human hcerN3 ge...    32   2.6  
U41303-1|AAA98969.1|  240|Homo sapiens small nuclear ribonuleopr...    32   2.6  
J04615-1|AAA36617.1|  240|Homo sapiens protein ( Human lupus aut...    32   2.6  
CR450350-1|CAG29346.1|  240|Homo sapiens SNRPN protein.                32   2.6  
BC025178-1|AAH25178.1|  240|Homo sapiens small nuclear ribonucle...    32   2.6  
BC024777-1|AAH24777.1|  240|Homo sapiens SNURF protein protein.        32   2.6  
BC003180-1|AAH03180.1|  240|Homo sapiens small nuclear ribonucle...    32   2.6  
BC000611-1|AAH00611.1|  240|Homo sapiens SNRPN protein protein.        32   2.6  
AK222633-1|BAD96353.1|  240|Homo sapiens small nuclear ribonucle...    32   2.6  
AF400432-1|AAK92481.1|  240|Homo sapiens small nuclear ribonucle...    32   2.6  
AF134832-1|AAD54487.1|   47|Homo sapiens small nuclear ribonucle...    32   2.6  
X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.       32   3.4  
M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small nuc...    32   3.4  
CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.                32   3.4  
AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear ribonucle...    32   3.4  
AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellu...    31   4.5  
CR457114-1|CAG33395.1|  364|Homo sapiens HAVCR1 protein.               31   5.9  
BC013325-1|AAH13325.1|  364|Homo sapiens HAVCR1 protein protein.       31   5.9  
U50078-1|AAD12586.1| 4861|Homo sapiens p532 protein.                   31   7.9  
AF007190-1|AAC02268.1|  513|Homo sapiens intestinal mucin protein.     31   7.9  

>X16163-1|CAA34288.1|  218|Homo sapiens SmB /B' autoimmune antigene 
           protein.
          Length = 218

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 174 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 216


>X15892-1|CAA33901.1|  240|Homo sapiens protein ( Human hcerN3 gene
           mRNA for N snRNP associated protein. ).
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>U41303-1|AAA98969.1|  240|Homo sapiens small nuclear
           ribonuleoprotein particle N protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>J04615-1|AAA36617.1|  240|Homo sapiens protein ( Human lupus
           autoantigen (small nuclear ribonuclepoprotein, snRNP,
           SM-D) mRNA, complete cds. ).
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>CR450350-1|CAG29346.1|  240|Homo sapiens SNRPN protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>BC025178-1|AAH25178.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>BC024777-1|AAH24777.1|  240|Homo sapiens SNURF protein protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>BC003180-1|AAH03180.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>BC000611-1|AAH00611.1|  240|Homo sapiens SNRPN protein protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>AK222633-1|BAD96353.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N variant protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>AF400432-1|AAK92481.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptide N protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238


>AF134832-1|AAD54487.1|   47|Homo sapiens small nuclear
           ribonucleoprotein N protein.
          Length = 47

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 3   RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 45


>X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPP 238


>M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small
           nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
          Length = 233

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 189 RPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPP 231


>CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPP 238


>AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 791 RPPPAGKXGFXXFLXAPXRFPPPXXTPPAXGXSGXXXPXXPPP 919
           RPP     G       P   PPP   PP  G  G   P   PP
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPP 238


>AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellular
           receptor 1 protein.
          Length = 359

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 182 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP---KADLTSSLP 325
           T    +TT RTS  +P TTT+  T    + ++  T TVP       T+S+P
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVSTTTSVP 186


>CR457114-1|CAG33395.1|  364|Homo sapiens HAVCR1 protein.
          Length = 364

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +2

Query: 167 TPTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLA 343
           T T    T   TT  T++ +P TTT++ T T +STT  +  T      T+S+P++  ++
Sbjct: 153 TTTVPMTTVPTTTVPTTMSIPTTTTVLTTMT-VSTTTSVP-TTTSIPTTTSVPVTTTVS 209


>BC013325-1|AAH13325.1|  364|Homo sapiens HAVCR1 protein protein.
          Length = 364

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +2

Query: 167 TPTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLA 343
           T T    T   TT  T++ +P TTT++ T T +STT  +  T      T+S+P++  ++
Sbjct: 153 TTTVPMTTVPTTTVPTTMSIPTTTTVLTTMT-VSTTTSVP-TTTSIPTTTSVPVTTTVS 209


>U50078-1|AAD12586.1| 4861|Homo sapiens p532 protein.
          Length = 4861

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 170  PTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 337
            P Q+  T + T+   S      ++ +E  T  +T V  T TVP ++    +PLSL+
Sbjct: 2626 PAQQAQTPVTTSPSASSTTSFMSSSLEDTTTATTPVTDTETVPASESPGVMPLSLL 2681


>AF007190-1|AAC02268.1|  513|Homo sapiens intestinal mucin protein.
          Length = 513

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
 Frame = +2

Query: 104 DFRPRSAGYGQRSRPRLG*WKTPTQETATNLLTTAR----TSLILPKTTTLMETATNLST 271
           DF   S      S P +    TPT +T T++ TT      T+ + P T++++ +    ST
Sbjct: 369 DFSTESLTTAMTSTPPITSSITPT-DTMTSMRTTTSWPTATNTLSPLTSSILSSTPVPST 427

Query: 272 TV---HITWTVPKADLTSSLPLSLVLAVGSKE 358
            V   H T T P + L ++LP+++  +  + E
Sbjct: 428 EVTTSHTTNTNPVSTLVTTLPITITRSTLTSE 459


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,508,923
Number of Sequences: 237096
Number of extensions: 2781862
Number of successful extensions: 15007
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14719
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)