Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D21
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   2.1  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   2.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   4.7  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   8.3  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.3  

>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +2

Query: 227 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 331
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 180 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 329
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 152 VVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 319
           ++EN +  +  +     P   + PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 23  MLENEEEASHSQLFTPCPVPPSFPKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +2

Query: 146 VKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 322
           V+++++  S +  + +  +P   N  +  N N    +P D       PP      +PTP
Sbjct: 126 VRIIDHRQSPSADQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTP 184


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 168 TQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 326
           T ET T  +    T   + + TT+      + T +  T T P  + T+ LP++
Sbjct: 103 TVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 329 GCSRWEVKNILEN**RNNVLTIYFKFHM 412
           GCS W V+ IL+N  R +V  I   F +
Sbjct: 286 GCSIWAVEKILQNINRKDVNAITIDFFL 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,078
Number of Sequences: 5004
Number of extensions: 49554
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)