Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_D21
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 34 0.17
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.40
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 32 0.53
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 31 0.93
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 31 1.6
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 30 2.8
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.8
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.8
01_06_0390 - 28938485-28938751,28939924-28941282 28 8.7
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 89 KFFMIFVLALLA--MANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI 262
K ++F L L A +A+A+ +N +E P +PP P+ + Y+P
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPP 66
Query: 263 DNGAYYVDPPQGRPYFKPTPFP 328
+ YY DPP Y+ P P P
Sbjct: 67 HSPDYY-DPPPSPDYYDPPPSP 87
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 182 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 331
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 143 PVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFK 313
P + + Y P + P V PP Y P +G P N + Y +PP GRP
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439
Query: 314 PTPFPG 331
P P G
Sbjct: 440 PPPSYG 445
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 31.5 bits (68), Expect = 0.93
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = -1
Query: 673 LXQFXPKXXXFXPXXXXX--GXXPTPXXFFFXXGGPXKPPPKGXXPXP 536
L Q+ P+ F P G P P GGP +PPP P P
Sbjct: 62 LPQYYPQYGNFYPPPPPSMPGPLPAPYDHHHRGGGPAQPPPPPPPPQP 109
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +2
Query: 89 KFFMIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPYIV----NPPKDYNPNGNGYE 256
+F + V+ LLA+A P A G P + P K+ + NG
Sbjct: 5 RFAAVVVVLLLALALIPGPAAAAGRALQGEKARPSEAAPAPTVAAGGSHKESAKSSNGQN 64
Query: 257 PIDNGAYYVDPPQGRPYFKPTPFP 328
P+ ++ PP +P TP P
Sbjct: 65 PVTKETHHQTPPPAKPPKDQTPPP 88
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +2
Query: 131 NAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 307
+AQ P V DS GY + RP P Y P G + GA PP G P+
Sbjct: 762 HAQGPYGVPPGGDSRPGYSQPEQRPAYSQP---YPPYGAPPQQPPYGAPSQQPPYGAPH 817
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 200 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 316
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 188 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 328
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 253 RTYRQRCILRGPSPRPTLLQAYPFPWVLAVGS 348
+ + RC R PS RPT Q P++ + S
Sbjct: 234 KNFLSRCFTRNPSDRPTAAQLLEHPFLASASS 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,841,076
Number of Sequences: 37544
Number of extensions: 422083
Number of successful extensions: 1015
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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