Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D20
         (1197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.43 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.00 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
 Frame = -1

Query: 717 PAGXGPXPPXPPPXXPXRP-XPAPXXPPXRPXXARPPXXPP 598
           P+   P P   P   P  P   +P  P   P    PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = -2

Query: 485 GXXRGPPXPPXXPXXXPPPXXPXXPXPXXPPXXP 384
           G    P   P  P    PP     P P  PP  P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/36 (33%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
 Frame = -1

Query: 693 PXPPPXXPXRPXPAPXXPPXRPXXARPPXXPP--PP 592
           P P P     P       P  P    PP  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = -2

Query: 824 PRRXXXPPPXAXXPXPAPPPPPXXP--XPPA 738
           P +    P     P P+  PPP  P   PP+
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 22.2 bits (45), Expect = 9.3
 Identities = 14/51 (27%), Positives = 15/51 (29%)
 Frame = -1

Query: 747 PXGAXXPXXXPAGXGPXPPXPPPXXPXRPXPAPXXPPXRPXXARPPXXPPP 595
           P G   P   P+   P PP P         P P  P   P     P    P
Sbjct: 404 PAGGQLP---PSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 785 PXPAPPPPPXXPXPP 741
           P PAPPPPP     P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 747 GGXXGRGRGGXXGXGGXXG 803
           G   G G+GG  G GG  G
Sbjct: 81  GKGRGHGKGGSRGRGGNRG 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 717  PAGXGPXPPXPPP 679
            P    P PP PPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 800  PXAXXPXPAPPPP 762
            P +  P P PPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.156    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,374
Number of Sequences: 438
Number of extensions: 9858
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)