Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D19
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    30   0.51 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   4.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   6.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +3

Query: 561 PPXPXXXXXXXXPAPGAXGXPPXGGXXSGPPTXXKTXLXXXPSXPPPP 704
           PP P        PAP     PP      GPP             PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 345 YGVCLKDHFPIALAEPKDLDRRARFDDAVTNVSAHFFNFLEDLPP 211
           + V +K+  PIA+ + K + R    + AV  V    FN  ED  P
Sbjct: 254 WSVAIKNGMPIAIEKAKAVSRVGNEEGAVGEVLERIFNIPEDYTP 298


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 375  LTSRLNNTSIYGVCLKDHFPIALAE--PKDLDRRARFDDAVTNVSAHFFNFLEDL 217
            L S L    IY +   + F  A  E  PK+   + + DDAV+ V  HFF  L  L
Sbjct: 985  LKSHLPTDGIYDL---NEFSTAYVEVTPKEEQMQLKTDDAVSIVVQHFFKDLSRL 1036


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 855 GXKKRGXRXG-GGXGXVWX-GGFXGGXXXRRGGXXXXXP 745
           G   RG R G GG G     GGF GG    RGG     P
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/102 (21%), Positives = 24/102 (23%), Gaps = 2/102 (1%)
 Frame = +2

Query: 530  PPXXPPXXXXXPXPXXXXXXXXXRPG--GPGXPPXXXGXIXPPHXXKNXPSXAXLXAPPP 703
            PP   P     P P         +P    P  P        P       P  A   APP 
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161

Query: 704  XXKXXXXXNXXXXXGXXXXXPPRLXXXPPLNPPXHTXPXPPP 829
                                P      PP+ PP    P P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/102 (21%), Positives = 24/102 (23%), Gaps = 2/102 (1%)
 Frame = +2

Query: 530  PPXXPPXXXXXPXPXXXXXXXXXRPG--GPGXPPXXXGXIXPPHXXKNXPSXAXLXAPPP 703
            PP   P     P P         +P    P  P        P       P  A     PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180

Query: 704  XXKXXXXXNXXXXXGXXXXXPPRLXXXPPLNPPXHTXPXPPP 829
              K                 P      PP+ PP    P P P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 514 KYFIDFXFYNITFITKKTLADINFXLYLKLNVLL 413
           K FI+F F+NIT  +K T       L + L + L
Sbjct: 706 KDFIEFLFHNITVSSKHTAVIFTSDLLMVLKIAL 739


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/38 (44%), Positives = 17/38 (44%)
 Frame = -2

Query: 876 PXXRXXRGXKKRGXRXGGGXGXVWXGGFXGGXXXRRGG 763
           P  R  RG   RG R G   G    GGF GG    RGG
Sbjct: 5   PGSRGGRGGS-RGGRGGFNGGR---GGFGGGRGGARGG 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,538
Number of Sequences: 5004
Number of extensions: 42956
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)