Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D09
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.65 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   8.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 717 PPPPPXXKKKXXPPPXPXP 773
           PPPPP  +    PPP P P
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = +1

Query: 703 PPRXXPPPPPX---QKKXXXPPPXPXXXXKK 786
           PP   PPPPP    +     PPP P    KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 717 PPPPPXXKKKXXPPPXPXP 773
           PPPPP       PPP P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 717 PPPPPXXKKKXXPPPXPXP 773
           PPPPP       PPP P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 711 GXPPPPPXXKKKXXPPPXPXP 773
           G PPPPP        PP P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 702  PPXGXPPPPPXXKKKXXPPPXPXP 773
            PP   PPPP        PP  P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 705 PXGXPPPPPXXKKKXXPPPXPXP 773
           P G P  PP       PPP P P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAPAP 482


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +3

Query: 609 PPPXFXXXXXPPXXXLXKNPXF*XKKKKKKXPPXGXPPPPPXXKKKXXP 755
           P P       PP   L + P     +     PP   PP PP  +++  P
Sbjct: 42  PAPVSKKPLPPPTRRLPRKPL--PFRSTSLQPPSSQPPAPPTHQREASP 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,757
Number of Sequences: 5004
Number of extensions: 47234
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)