Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D06
         (1390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.00 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   3.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   8.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
 Frame = -3

Query: 509 RXXAPXGXXPATRRWGXXHAPPXXXX-----RAXXXXRPPPPPPPXXXXXG 372
           R  AP    PA         PP          A    RPPPPPPP     G
Sbjct: 273 RPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRG 323



 Score = 25.0 bits (52), Expect(2) = 1.00
 Identities = 28/125 (22%), Positives = 34/125 (27%)
 Frame = -3

Query: 410 PPPPPPPXXXXXGGXXVAXXXXXVXXRXLXXSXFXXXPLSAXPPXPXPGGXAXRXXXXXX 231
           PPPPPP      G                  +     P  + P  P P G A R      
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSN--PPAPPPAIPGRSAPALP-PLGNASR--TSTP 415

Query: 230 PRPXPXXVPPXSXXXXXXSGGXXVLXXXXPPXXXPXXXXVLFLXXGGPPXXXPXXGGGXX 51
           P P P  +PP +      S    +          P    +      G P   P       
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475

Query: 50  PPPPP 36
           PPP P
Sbjct: 476 PPPAP 480



 Score = 23.0 bits (47), Expect(2) = 1.00
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -3

Query: 497 PXGXXPATRRWGXXHAPPXXXXRAXXXXRPPPPPP 393
           P    P+ R  G    PP     +     PPPPPP
Sbjct: 312 PPPPPPSRRNRGK---PPIGNGSSNSSLPPPPPPP 343


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = -3

Query: 500 APXGXXPATRRWGXXHAPPXXXXRAXXXXRPPPPPPPXXXXXGGXXVA 357
           AP    P     G    PP     A     PPPPPPP     G    A
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYA 794



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 95  GGPPXXXPXXG-GGXXPPPPP 36
           GGPP   P  G  G  PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 410  PPPPPPPXXXXXGGXXVA 357
            PPPPPPP     GG  V+
Sbjct: 947  PPPPPPPLVSAAGGKFVS 964


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = +3

Query: 42  GXGGGPPXXXXXXXGGXPXXKEKXXXRGXGXXGGGXXXENPXTTGXAXGXXGXXXXXGXX 221
           G  GGPP       G      E     G G  GGG         G   G  G     G  
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 222 GPG 230
           G G
Sbjct: 255 GGG 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.140    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,032
Number of Sequences: 5004
Number of extensions: 14490
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 769037886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)