Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_D04
(924 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14973-1|AAA85661.1| 56|Homo sapiens ribosomal protein S29 pro... 108 2e-23
L31610-1|AAB27426.1| 56|Homo sapiens protein ( Homo sapiens (c... 108 2e-23
BC035313-1|AAH35313.1| 56|Homo sapiens ribosomal protein S29 p... 108 2e-23
BC032813-1|AAH32813.1| 56|Homo sapiens ribosomal protein S29 p... 108 2e-23
AB061847-1|BAB79485.1| 56|Homo sapiens ribosomal protein S29 p... 108 2e-23
AB007165-1|BAA25827.1| 26|Homo sapiens ribosomal protein S29 p... 54 1e-06
BC114514-1|AAI14515.1| 246|Homo sapiens FtsJ homolog 2 (E. coli... 33 1.9
BC114564-1|AAI14565.1| 240|Homo sapiens FTSJ2 protein protein. 31 5.9
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 31 5.9
AF093415-1|AAF22488.1| 246|Homo sapiens cell division protein F... 31 5.9
>U14973-1|AAA85661.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 108 bits (260), Expect = 2e-23
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +2
Query: 125 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 292
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>L31610-1|AAB27426.1| 56|Homo sapiens protein ( Homo sapiens
(clone cori-1cl5) S29 ribosomal protein mRNA, complete
cds. ).
Length = 56
Score = 108 bits (260), Expect = 2e-23
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +2
Query: 125 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 292
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>BC035313-1|AAH35313.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 108 bits (260), Expect = 2e-23
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +2
Query: 125 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 292
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>BC032813-1|AAH32813.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 108 bits (260), Expect = 2e-23
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +2
Query: 125 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 292
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>AB061847-1|BAB79485.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 108 bits (260), Expect = 2e-23
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +2
Query: 125 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 292
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>AB007165-1|BAA25827.1| 26|Homo sapiens ribosomal protein S29
protein.
Length = 26
Score = 53.6 bits (123), Expect = 1e-06
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 209 GLIRKYGLNICRQCFREYAHDIGFKK 286
GLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 GLIRKYGLNMCRQCFRQYAKDIGFIK 26
>BC114514-1|AAI14515.1| 246|Homo sapiens FtsJ homolog 2 (E. coli)
protein.
Length = 246
Score = 32.7 bits (71), Expect = 1.9
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 146 TKYLRGPF*EIKLFLANEQQIRYTFKMANLNEKKQILRNSL 24
T++LR PF +K + R FK+ +NE+ QILR SL
Sbjct: 36 TRHLRDPF--VKAAKVESYRCRSAFKLLEVNERHQILRPSL 74
>BC114564-1|AAI14565.1| 240|Homo sapiens FTSJ2 protein protein.
Length = 240
Score = 31.1 bits (67), Expect = 5.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 146 TKYLRGPF*EIKLFLANEQQIRYTFKMANLNEKKQILRNSL 24
T++LR PF +K + R FK+ +NE+ QILR L
Sbjct: 30 TRHLRDPF--VKAAKVESYRCRSAFKLLEVNERHQILRPGL 68
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.1 bits (67), Expect = 5.9
Identities = 20/61 (32%), Positives = 21/61 (34%)
Frame = +1
Query: 700 PGPXRLAAEPVSXSPPXGG*XPGXPPEXXGDYRXEKNPXXPXTGPQKGPRTX*KGPPXCX 879
P P +P PP G PG PP G Y P P GP P PP
Sbjct: 201 PPPVLFPGQPFG-QPPLGPLPPGPPPPVPG-YGPPPGPPPPQQGPPPPPGPFPPRPPGPL 258
Query: 880 G 882
G
Sbjct: 259 G 259
>AF093415-1|AAF22488.1| 246|Homo sapiens cell division protein FtsJ
protein.
Length = 246
Score = 31.1 bits (67), Expect = 5.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 146 TKYLRGPF*EIKLFLANEQQIRYTFKMANLNEKKQILRNSL 24
T++LR PF +K + R FK+ +NE+ QILR L
Sbjct: 36 TRHLRDPF--VKAAKVESYRCRSAFKLLEVNERHQILRPGL 74
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,031,423
Number of Sequences: 237096
Number of extensions: 2434749
Number of successful extensions: 4780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4719
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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