Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_D04
(924 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 101 5e-22
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 31 1.2
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 28 8.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.2
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 8.2
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 101 bits (243), Expect = 5e-22
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = +2
Query: 125 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 292
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 185 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 286
CR C R+ + +G++ICR C + + KK
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 185 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 286
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 172 RIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 273
RIP P++L+Q WL R E R+CS H
Sbjct: 27 RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 184 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 285
M I + + WL+P ++F+H+ Q + H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 184 MPILLQQAWLNPQVRFEHMQTVLQRV 261
+ +L Q W +P++RF+H+ LQ +
Sbjct: 80 LDLLFSQIWHDPRLRFDHLTNCLQNL 105
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = +1
Query: 700 PGPXRLAAEPVSXSPPXGG*XPGXP----PEXXGDYRXEKNPXXPXTGPQKGPRTX*KGP 867
P P R + SPP G G P P G + + GP+ GPR +G
Sbjct: 330 PPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGG 389
Query: 868 P 870
P
Sbjct: 390 P 390
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = +1
Query: 700 PGPXRLAAEPVSXSPPXGG*XPGXP----PEXXGDYRXEKNPXXPXTGPQKGPRTX*KGP 867
P P R + SPP G G P P G + + GP+ GPR +G
Sbjct: 351 PPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGG 410
Query: 868 P 870
P
Sbjct: 411 P 411
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = +1
Query: 700 PGPXRLAAEPVSXSPPXGG*XPGXP----PEXXGDYRXEKNPXXPXTGPQKGPRTX*KGP 867
P P R + SPP G G P P G + + GP+ GPR +G
Sbjct: 336 PPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGG 395
Query: 868 P 870
P
Sbjct: 396 P 396
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +1
Query: 691 PLXPG-PXRLAAEPVSXSP----PXGG*XPGXPPEXXGDYRXEKNPXXPXTGPQKGPRTX 855
P PG P + EP++ P P G P PP GD + +P P + Q G
Sbjct: 131 PGNPGRPPQQPCEPITPPPCKPCPQGPAGPPGPPGPAGDAGSDGSPGAPGSDGQPGAAGD 190
Query: 856 *KGP 867
KGP
Sbjct: 191 -KGP 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,813
Number of Sequences: 27780
Number of extensions: 335204
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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