Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D02
         (893 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    43   0.009
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    42   0.021
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.11 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    36   1.4  
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    35   3.2  
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet...    33   9.8  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = +1

Query: 334 RGEAVCVLGALPXPRSXTRXARSFGXGERYQL 429
           R   +C  G +P PRS TR ARSFG GERY+L
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 41.9 bits (94), Expect = 0.021
 Identities = 27/54 (50%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 310 CINESAXARGEAVCVLGALPXPRSXTRXARSFGXGERYQLXQ-RR*XGYPQNQG 468
           CI + A AR EAV VL ALP  RS TR  RS G G         R  G PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -1

Query: 362 APNTQTASPRALADSLMQ 309
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +3

Query: 399 VVRXXRAVSAXSKAVIXLSTESG 467
           VVR  RAVSA SKAVI LSTESG
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESG 52


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +3

Query: 564 PXTSIXKIXAQVRGGETXRXIKIXGVSPWXXPXC 665
           P TSI KI AQVRGGET +  K     P   P C
Sbjct: 22  PLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSC 55


>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
           arietinum|Rep: Reverse transcriptase - Cicer arietinum
           (Chickpea) (Garbanzo)
          Length = 37

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 395 LGRSXXASGISSXKGG--NXVIHRIRGITQERTCE 493
           LG +  A G    +G   N VIH  +GITQERTCE
Sbjct: 3   LGPTSHAPGRHGGRGXFDNTVIHXNQGITQERTCE 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,813,508
Number of Sequences: 1657284
Number of extensions: 6315296
Number of successful extensions: 9808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9768
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)