Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_D01
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   9.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 456 LFNNVENII--TFDIFGVMXLDTKKLLLRLSVLPRASDFYKIR 334
           LF+NV        D +    LDTKK   ++S L   +D Y ++
Sbjct: 359 LFSNVTPKFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVK 401


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +1

Query: 604 PXPXXXGXXPPPPXXPNXXXRXXCPPPXPXPXPXXNXXXSPPPXXXP 744
           P     G  P P   P    R    PP P   P        PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRG--SPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 LFPSIPQLFSSHSQPAYLG 214
           + P  P+L+  H  P +LG
Sbjct: 9   ILPLNPKLYDKHRAPKFLG 27


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 191 SFDECMHIGEADSQQDNQQLVHFGY 117
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,044
Number of Sequences: 438
Number of extensions: 8572
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)