Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_C20
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 137 2e-33
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 126 3e-30
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 81 2e-16
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 3e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 3e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 57 3e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 57 4e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 9e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 1e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 3e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 5e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 53 6e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 47 3e-06
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 46 9e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 9e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 2e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 41 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 3e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 5e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.001
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.017
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.37
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 2.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.6
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 2.6
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 4.6
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 8.1
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 137 bits (331), Expect = 2e-33
Identities = 64/96 (66%), Positives = 78/96 (81%)
Frame = +1
Query: 331 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXLGDXLNA 510
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ LGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 511 KCHACIGGTXVREDIRQLESXXXXXXXXXXXXYDMI 618
+CHACIGGT VR+D+ L++ +DMI
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMI 152
Score = 82.2 bits (194), Expect = 9e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +3
Query: 174 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 323
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 126 bits (305), Expect = 3e-30
Identities = 60/81 (74%), Positives = 69/81 (85%)
Frame = +1
Query: 325 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXLGDXL 504
KGRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ LGD +
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 505 NAKCHACIGGTXVREDIRQLE 567
N +CHACIGGT V DI++L+
Sbjct: 117 NVQCHACIGGTSVGNDIKKLD 137
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +3
Query: 174 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 329
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +G
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG 58
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 81.0 bits (191), Expect = 2e-16
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXLG 495
+A GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLG 136
Query: 496 DXLNAKCHACIGGTXVREDIRQL 564
+N K GGT +R+DI +L
Sbjct: 137 KHMNVKVMVTTGGTTLRDDIIRL 159
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +3
Query: 126 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 293
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 294 IQQRAIMPCIQG 329
IQ+ +I + G
Sbjct: 70 IQEESIPIALSG 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 3e-12
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXLG 495
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Query: 496 DXLNAK 513
K
Sbjct: 209 KYTEVK 214
Score = 43.6 bits (98), Expect = 4e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 213 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 311
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 3e-09
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 6/62 (9%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQK 477
LA +G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYN 106
Query: 478 VV 483
V+
Sbjct: 107 VL 108
Score = 34.7 bits (76), Expect = 0.017
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 216 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 329
+TF D NL L R I+ FEKP+++Q I ++G
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG 51
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 57.2 bits (132), Expect = 3e-09
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIX 489
L +GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 102 LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKD 161
Query: 490 LGDXLNAKCHACIGGTXVREDIRQL 564
+ + A +GG + E L
Sbjct: 162 FSKGTDLRSVAIVGGVSLEEQFSLL 186
Score = 33.1 bits (72), Expect = 0.053
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 222 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 329
F M L + LLR I+ GF+ P+ IQ++ I ++G
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 56.8 bits (131), Expect = 4e-09
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +1
Query: 331 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXLGDXLNA 510
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + +G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 511 KCHACIGG 534
+ +GG
Sbjct: 144 RSVVIVGG 151
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +3
Query: 78 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 257
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 258 GIYAYGFEKPSAIQQRAI 311
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 55.6 bits (128), Expect = 9e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 325 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXLGDXL 504
+GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + LG L
Sbjct: 43 EGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL 102
Query: 505 NAKCHACIGG-TXVREDI 555
N K +GG +R+ I
Sbjct: 103 NLKHALIVGGMDMIRQSI 120
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 55.2 bits (127), Expect = 1e-08
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 328 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXLGDXL- 504
G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 505 NAKCHACIGGTXVREDI 555
+ + GG +++D+
Sbjct: 148 DVRTAVFYGGINIKQDM 164
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +3
Query: 222 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGT 332
F D LK ELLR I GFE PS +QQ I I GT
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.0 bits (124), Expect = 3e-08
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 486
LA G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 487 XLGDXLNAKCHACIGGTXVREDIRQL 564
+ + CIGG ++ ++L
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQEL 377
Score = 32.7 bits (71), Expect = 0.070
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 219 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 383
+F MNL +L+G+ GFE P+ IQ + I + G ++ + K F+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFI 314
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.2 bits (122), Expect = 5e-08
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 319 ASKGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVI 486
A KGRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 487 XLGDXLNAKCHACIGGTXVREDIRQL 564
+G + IGG +E+ +L
Sbjct: 133 KIGRLHSFSAGLIIGGNNYKEEKERL 158
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 52.8 bits (121), Expect = 6e-08
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +1
Query: 319 ASKGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIXL 492
AS G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELI 215
Query: 493 GDXLNAKCHACIGGTXVREDIRQL 564
N + + GG V++ R L
Sbjct: 216 KPSPNIRVMSITGGLAVQKQQRLL 239
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 47.2 bits (107), Expect = 3e-06
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Frame = +1
Query: 331 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVI 486
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 487 XLGDXLNAKCHACIGGTXVREDIRQL 564
+ L +C + +GG E Q+
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQM 372
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 45.6 bits (103), Expect = 9e-06
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Frame = +1
Query: 322 SKGRDVIAQAQSGTGKTATFSISILQQIDTS--IRECQ---ALILAPTRELAQQIQKVVI 486
+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECK 512
Query: 487 XLGDXLNAKCHACIGGTXVREDIRQLE 567
LN + GG +++ I L+
Sbjct: 513 PFLKLLNIRACCAYGGAPIKDQIADLK 539
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 198 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 335
D + V ++ L + + I + G+EKP++IQ +AI P I R
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 328 GRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIXLGD 498
GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + L
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ 261
Query: 499 XLNAKCHACIGGTXVREDIR 558
N K GG E R
Sbjct: 262 GTNLKAVVVYGGAPKSEQAR 281
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 9e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 331 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 477
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +1
Query: 325 KGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 480
K +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 41.1 bits (92), Expect = 2e-04
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKV 480
+A GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214
Query: 481 VIXLGDXLNAKCHACIGGTXVREDIRQL 564
G + GG IR L
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 213 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 308
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 40.3 bits (90), Expect = 3e-04
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQ 474
L + +D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIY 233
Query: 475 KVVIXLGD 498
V L +
Sbjct: 234 NVANKLNN 241
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 5e-04
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 322 SKGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIXLGD 498
S G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 171 SYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMS 230
Query: 499 XLNAKCHACIGGTXVREDIRQL 564
+ A G +R + QL
Sbjct: 231 GAGLQVCAWTGQKSLRHETYQL 252
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 38.3 bits (85), Expect = 0.001
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 328 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIXLG 495
GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 496 DXLNAKCHACIGGTXVREDIRQL 564
+ IGG R + +L
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKL 208
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 213 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 383
+E F D+ L E + + I GFE + IQ+R+I P + G ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.9 bits (84), Expect = 0.002
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Frame = +1
Query: 316 LASKGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 441
+ + GRD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 442 APTRELAQQIQKVVIXLGDXLNAKCHACIGGTXVREDIRQLE 567
APTREL QI + + A GG +R IRQ++
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQID 303
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.7 bits (76), Expect = 0.017
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +1
Query: 334 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIXLGD 498
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI + L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTY 137
Query: 499 XLNAKCHACIGG-TXVRED 552
+ IGG + +RE+
Sbjct: 138 GTGIRVSYAIGGNSKMREE 156
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 328 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIXL 492
G VI + +GK+ + I ILQ + + A + PT+ LAQ +K +I +
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLIDI 379
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 186 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 278
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 358 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 474
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 189 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 323
LDT+W V + NL+ + + I + F PS I + MP +
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSL 228
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 163 DLREWTLGHLTPT 201
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 390 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEG 479
D+ TNR + SSFD S P+N++G
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDG 516
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 183 QGPFPEVHRNYLDPSMAHFWNPLANL 106
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,802
Number of Sequences: 5004
Number of extensions: 58698
Number of successful extensions: 194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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