Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_C19
(1363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.091
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.12
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 30 0.85
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 4.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 7.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.7 bits (81), Expect = 0.007
Identities = 45/216 (20%), Positives = 56/216 (25%), Gaps = 3/216 (1%)
Frame = +3
Query: 639 PPXXPXXAGXXP--PXPPXXXXXXXPXXXPPPXPPXXXRSPXPLXXXXXXPXXGPXXXXP 812
PP P + P P P P PP P P P P P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 813 XXXKXXXAXXTAXGPPPPXAPXXXPXPXHXXPXXPQXXTX*HPPGXQXXRXXXXXPPXPX 992
A PP P P P P PP + P P
Sbjct: 1123 VPKPSVAA------PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS-VAAPPVPAPS 1175
Query: 993 HQXPPNTRTQXXXKYPXINPPHKXQXXXXPSXHXXTLPXAXXPXXIPTXXSHXPHPHXPT 1172
PP + P + PP + PS +P +PT + P PT
Sbjct: 1176 SGIPPVPKPAAGV--PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Query: 1173 XTQXXQXXP-XXSXXLXXPHXXQTTXHPXPQXXPTS 1277
P + + P + H PTS
Sbjct: 1234 AKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTS 1269
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Frame = +3
Query: 636 GPPXXPXXAGXXPPXPP--XXXXXXXPXXXPPPXPPXXXRSPXPLXXXXXXPXXGPXXXX 809
G P P A PP PP P PP PP P P P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKA 1236
Query: 810 P 812
P
Sbjct: 1237 P 1237
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.091
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 639 PPXXPXXAGXXPPXPPXXXXXXXPXXXPPPXP 734
PP P G PP PP P PPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.85
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 668 PPAGPXXXXPXXPXXPXPXPXPTPXSXXPXPP 763
PP P P P P P P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +2
Query: 1082 LXXPPXPPSSXXSPXNPHXXLXXTTPPXTNXNPXXPXXPPXXXXTXPPP 1228
L PP PP + P + P P P PP PPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +3
Query: 723 PPXPPXXXRSPXPLXXXXXXPXXGPXXXXPXXXKXXXAXXTAXGPPPPXAP 875
PP PP P P P P P A PPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 450 PXTPPXPPPRXXVXWGXXPPPPXXXXGRXPXRP 548
P P PPP + PPPP G P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 459 PPXPPPRXXVXWGXXPPPP 515
PP PPP G PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 459 PPXPPPRXXVXWGXXPPPP 515
PP PPP V PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.12
Identities = 25/102 (24%), Positives = 27/102 (26%)
Frame = +3
Query: 639 PPXXPXXAGXXPPXPPXXXXXXXPXXXPPPXPPXXXRSPXPLXXXXXXPXXGPXXXXPXX 818
PP A PP PP PP +P P+ P P P
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP-PVPTPPSLPPSAPPSLPPSA 435
Query: 819 XKXXXAXXTAXGPPPPXAPXXXPXPXHXXPXXPQXXTX*HPP 944
A P PP AP P P P PP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 31.5 bits (68), Expect = 0.28
Identities = 36/149 (24%), Positives = 36/149 (24%), Gaps = 4/149 (2%)
Frame = +3
Query: 459 PPXPPPRXXVXWGXXPPPPXXXXGRXPXRPXXWKLSXXPXXXXXXXXXXXXXXXXXXXXG 638
PP PPP G P PP P P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP-----RSAPSTGRQPPPLSSSRAVSNPPAP 391
Query: 639 PPXXP-XXAGXXPPXPPXXXXXXXPXXXPPPXPPXXXRS---PXPLXXXXXXPXXGPXXX 806
PP P A PP P PP PP S P P P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 807 XPXXXKXXXAXXTAXGPPPPXAPXXXPXP 893
A A P PP AP P P
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 31.1 bits (67), Expect = 0.37
Identities = 33/165 (20%), Positives = 43/165 (26%)
Frame = +2
Query: 731 PTPXSXXPXPPSXXXAXPQXXXXXXXXXXXXTXXXXXHRXRTXPXXXPXXXXXPXPPXAX 910
PT S P PPS + P + + P P P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283
Query: 911 VTAXXHXXTPPRRXXXXGXXLXPXXXXPPXXPQHKNTXQXXIPLHKSXPQTPXXXXSLXX 1090
+ + PP L PP P + P+ + SL
Sbjct: 284 INSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNS-----SLPP 338
Query: 1091 PPXPPSSXXSPXNPHXXLXXTTPPXTNXNPXXPXXPPXXXXTXPP 1225
PP PP S + P + PP P P P PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPP-----PPPPRSAPSTGRQPPP 378
Score = 28.3 bits (60), Expect = 2.6
Identities = 51/235 (21%), Positives = 56/235 (23%)
Frame = +3
Query: 351 GXPXXXXTPPXGPXXRAXRRXXTXK*VXAXAXPPXTPPXPPPRXXVXWGXXPPPPXXXXG 530
G P PP P + R + A A P P PPP P P
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP----PIPPPSNGTV-SSPPNSPPRPIA 276
Query: 531 RXPXRPXXWKLSXXPXXXXXXXXXXXXXXXXXXXXGPPXXPXXAGXXPPXPPXXXXXXXP 710
P S P PP P P P
Sbjct: 277 PVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP-PIGNGSSNSS 335
Query: 711 XXXPPPXPPXXXRSPXPLXXXXXXPXXGPXXXXPXXXKXXXAXXTAXGPPPPXAPXXXPX 890
PPP P PL P G P + A T PPP +
Sbjct: 336 LPPPPPPPRSNAAGSIPL------PPQGRSAPPPPPPR--SAPSTGRQPPPLSSSRAVSN 387
Query: 891 PXHXXPXXPQXXTX*HPPGXQXXRXXXXXPPXPXHQXPPNTRTQXXXKYPXINPP 1055
P P P PP R PP P PP+ P PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASR--TSTPPVP---TPPSLPPSAPPSLPPSAPP 437
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 671 PAGPXXXXPXXPXXPXPXPXPTPXSXXP 754
PAG P P P P P P P P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.9 bits (64), Expect = 0.85
Identities = 52/238 (21%), Positives = 64/238 (26%), Gaps = 9/238 (3%)
Frame = +3
Query: 675 PXPPXXXXXXXPXXXPPPXPPXXXRSPXPLXXXXXXPXXGPXXXXPXXXKXXXAXXTAXG 854
P PP P R P P G P + T
Sbjct: 850 PLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLP- 908
Query: 855 PPPPXAPXXXPXPXHXXPXXPQXXTX*HPPGXQXXRXXXXXPP--XPXHQXPPNTRTQXX 1028
PPPP A P P P+ HPP R PP P H PN T
Sbjct: 909 PPPPTASMTASAPAIASPPPPKVGETYHPPTASGTR----VPPVQQPSH---PNPYTPVA 961
Query: 1029 XKYPXINPPHKXQXXXXPSXHXXTLPXAXXPXXIPTXXSHXPHPHXPTXTQXXQXXPXXS 1208
+ P P + T P A + +H PH + P
Sbjct: 962 PQSPVAAASRISSSPNMPPSNPYT-PIAVASSTV--NPAHTYKPHGGSQIVPPPKQPANR 1018
Query: 1209 XXLXXPHXXQ-TTXHPXPQXXPTSPNTRHP---PTXXPASS---PXNXNQXSXTPPPP 1361
P Q + + P SP+ P P P SS P + + PPP
Sbjct: 1019 VVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPP 1076
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 447 PPXTPPXPPPRXXVXWGXXPPPP 515
PP PP PPP PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 841 PPPXDXPXXXPPXXXPPPP 897
PPP P PP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 672 PPXPPXXXXXXXPXXXPPPXPP 737
PP PP P PPP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/66 (25%), Positives = 20/66 (30%)
Frame = +1
Query: 589 PHXXXPPPPHRXXPRXXXXXPPXVRGTXRRXXXXXAXRPXPPXXXPPTHPXLXXAPPPFX 768
P PP P P P + +P P PP+ P L A PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 769 RXXXPP 786
PP
Sbjct: 199 PKVPPP 204
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 1272 TSPNTRHPPTXXPASSPXNXNQXSXTPPPP 1361
T N P T ++SP NQ PPPP
Sbjct: 144 TDSNIPRPGTVKSSASPFVPNQNPSAPPPP 173
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 547 GRXGXRPSXXLGGGGXXPQXTXXRGGGXGGVXGG 446
G G R G GG RGGG GG GG
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.144 0.504
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,295
Number of Sequences: 5004
Number of extensions: 33748
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 751153284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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