Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_C18
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 30 0.39
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 4.8
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 26 6.3
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 6.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 6.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.3
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 26 8.4
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 8.4
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.39
Identities = 23/92 (25%), Positives = 38/92 (41%)
Frame = +2
Query: 233 QGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQP 412
+ + P+AP + P +D L P + R V N + + I SH +DQ
Sbjct: 83 EANESPKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQI 136
Query: 413 IESHRNTRDLRFLYPRGKLPVPTLPPFNPKPI 508
+ NT ++ +PT P NP+P+
Sbjct: 137 SDIKHNTSEI------SSTMIPTTPSKNPEPV 162
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +2
Query: 278 ILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNTRDLRFLYP 457
+LPS + D L +R + N S++H +I + HR + + P
Sbjct: 2310 VLPSDLRDELLFQEAVQMRLFDHATRNNNSVDHEVEMEEIDQGGTVSEHRE----KSVKP 2365
Query: 458 RGKLPVPTL 484
K+PVP L
Sbjct: 2366 VKKIPVPNL 2374
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -1
Query: 372 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 238
S + SLFS R RF F G++GW +LG+ S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -2
Query: 239 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 99
H D IAVPG L+ + L A R G G+K PE T E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 341 TNPENNEA-SIEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFN 496
TN NE S H T+ +G D+ + + +YP K+ TLP N
Sbjct: 446 TNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVN 498
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 169 ANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYRRPSD 279
A+ N+ S+ ++ A A+SR +CS C K ++ D
Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCD 353
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 478 WNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM*MFNGRLVIFWI 344
W + + K +P V++A KSN N + ++ G + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 396 LDLTSRSRATVTQGTCGFCTLEGNCLFQRFLRLTPSQYILIWXTVTDHMRRRIXKXCGNI 575
+DL S ++ F + E NCL+ + L P Y + + TD + R G +
Sbjct: 246 IDLLSSTKVAAKSQFTLFGSRETNCLYYAVIYLAPGDYHR-FHSPTDWVVERRRHFSGEL 304
Query: 576 --MSPFLIPR 599
+SPF+ R
Sbjct: 305 FSVSPFMARR 314
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 593 NQKRAHYIAAXLLDPPTHVVGNGXPYQYI 507
NQ++ Y A L PP+H P +Y+
Sbjct: 275 NQRKLDYAPAPKLPPPSHEESYNPPEEYL 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,534
Number of Sequences: 5004
Number of extensions: 66122
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -