Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C17
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    30   0.43 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.0  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    26   9.3  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
 Frame = +2

Query: 749 PSXFXPLENXP-------PVXPSXFPXPX---PXLPGKPXSPLFSPLGKXVAPFXHTXPP 898
           PS   P +N P       P+ P+ F  P    P +PG P  P  +     + P     PP
Sbjct: 474 PSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPP 533

Query: 899 GXXSQFRGVRPSXXQXGXGLPQXPP 973
           G  + F G        G      PP
Sbjct: 534 GMPAPFPGYPAVPAMPGIPGATAPP 558


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +2

Query: 749 PSXFXPLENXPPVXPSXFPXP-XPXLPGKPXSPLFSP-LGKXVAPFXHTXPPGXXSQ 913
           P+   P+ +  P  PS  P P  P  P K  SP  +P L   V P     PP   SQ
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVK--SPPSAPSLPSAVPPMPPKVPPPPLSQ 208


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 654 PPPPLYQTXPKNXXPPXPKXGRKP 725
           P  P+ +   +   PP PK GRKP
Sbjct: 20  PQKPMIRVSKQWVVPPRPKPGRKP 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,224
Number of Sequences: 5004
Number of extensions: 24160
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)