Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C17
         (976 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.2  
U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...    30   2.9  
Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    29   6.6  
U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    29   6.6  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    29   6.6  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      29   6.6  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    29   6.6  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
 Frame = +2

Query: 725 PPXXL*XIPSXFXP---LENXPPVXPSX--FPXPXPXLPGKPXSPLFSPLGKXVAPFXHT 889
           PP  +  +P    P   +   PP  PS   +P P P  PG+   P   P      P    
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325

Query: 890 XPPGXXSQFRGVRPSXXQXGXGLPQXPP 973
            PPG         P     G G+P  PP
Sbjct: 326 GPPGMGGMPPPPPPGMRYPG-GMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
 Frame = +2

Query: 725 PPXXL*XIPSXFXP---LENXPPVXPSX--FPXPXPXLPGKPXSPLFSPLGKXVAPFXHT 889
           PP  +  +P    P   +   PP  PS   +P P P  PG+   P   P      P    
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335

Query: 890 XPPGXXSQFRGVRPSXXQXGXGLPQXPP 973
            PPG         P     G G+P  PP
Sbjct: 336 GPPGMGGMPPPPPPGMRYPG-GMPPPPP 362


>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
 Frame = +2

Query: 779 PPVXPSXFPXPXPXLPGKPXSPLF--SPLGKXVAPFXHTXPPGXXSQFR 919
           P + P  FP P    PG P  P F   P+G    P      P    QFR
Sbjct: 92  PMMAPRPFPGPGVGFPGAPGMPPFPGGPMGMAGPPGMPPMMPRPPQQFR 140


>Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical
           protein F33A8.9 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
 Frame = -2

Query: 969 GXWGKPXPXWXXXGLTPRNWEXXPGGXVWXKGATXFPKGEKR--GEXGFPGKXGXGXGNX 796
           G  G P P     G+ PR     PG           P G     G  GFPG  G    + 
Sbjct: 238 GPPGPPGPPGNPGGIGPRGPPGDPGIMTQDSRGVEGPSGPSGPPGPMGFPGPKGIDGFSQ 297

Query: 795 EGXTGGXFSRG 763
            G  G   +RG
Sbjct: 298 VGSMGPPGNRG 308


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/69 (30%), Positives = 24/69 (34%)
 Frame = +2

Query: 767 LENXPPVXPSXFPXPXPXLPGKPXSPLFSPLGKXVAPFXHTXPPGXXSQFRGVRPSXXQX 946
           L + PP  P     P P  P     P  +P G   AP      PG      G+RP     
Sbjct: 744 LGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP-PGMRPPPGAP 802

Query: 947 GXGLPQXPP 973
           G G    PP
Sbjct: 803 GGGGGMYPP 811


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/69 (30%), Positives = 24/69 (34%)
 Frame = +2

Query: 767 LENXPPVXPSXFPXPXPXLPGKPXSPLFSPLGKXVAPFXHTXPPGXXSQFRGVRPSXXQX 946
           L + PP  P     P P  P     P  +P G   AP      PG      G+RP     
Sbjct: 744 LGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP-PGMRPPPGAP 802

Query: 947 GXGLPQXPP 973
           G G    PP
Sbjct: 803 GGGGGMYPP 811


>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/69 (28%), Positives = 22/69 (31%)
 Frame = -2

Query: 969 GXWGKPXPXWXXXGLTPRNWEXXPGGXVWXKGATXFPKGEKRGEXGFPGKXGXGXGNXEG 790
           G  G P P        P+     P G     G    P+G   G  G PG  G G     G
Sbjct: 128 GGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHG 187

Query: 789 XTGGXFSRG 763
             GG    G
Sbjct: 188 GQGGPPGHG 196


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/69 (28%), Positives = 22/69 (31%)
 Frame = -2

Query: 969 GXWGKPXPXWXXXGLTPRNWEXXPGGXVWXKGATXFPKGEKRGEXGFPGKXGXGXGNXEG 790
           G  G P P        P+     P G     G    P+G   G  G PG  G G     G
Sbjct: 408 GGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHG 467

Query: 789 XTGGXFSRG 763
             GG    G
Sbjct: 468 GQGGPPGHG 476


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/69 (30%), Positives = 24/69 (34%)
 Frame = +2

Query: 767 LENXPPVXPSXFPXPXPXLPGKPXSPLFSPLGKXVAPFXHTXPPGXXSQFRGVRPSXXQX 946
           L + PP  P     P P  P     P  +P G   AP      PG      G+RP     
Sbjct: 744 LGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP-PGMRPPPGAP 802

Query: 947 GXGLPQXPP 973
           G G    PP
Sbjct: 803 GGGGGMYPP 811


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/69 (30%), Positives = 24/69 (34%)
 Frame = +2

Query: 767 LENXPPVXPSXFPXPXPXLPGKPXSPLFSPLGKXVAPFXHTXPPGXXSQFRGVRPSXXQX 946
           L + PP  P     P P  P     P  +P G   AP      PG      G+RP     
Sbjct: 744 LGDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP-PGMRPPPGAP 802

Query: 947 GXGLPQXPP 973
           G G    PP
Sbjct: 803 GGGGGMYPP 811


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,893
Number of Sequences: 27780
Number of extensions: 187176
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)