Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C15
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.032
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -1

Query: 843 PPXGGGGXXPPXPPPRGXXXXXXGXXXXXPPPPPXXXGGGGGGXXXP 703
           PP    G  PP PPP G      G     PPPPP     GG     P
Sbjct: 753 PPAPIMGGPPPPPPPPGVA----GAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 33.9 bits (74), Expect = 0.032
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPP 776
           PPPPPPP   G G    P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPP 776
           PPPPPPP    G     P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -1

Query: 843 PPXGGGGXXPPXPPPRGXXXXXXGXXXXXPPPPPXXXGGGGGGXXXP 703
           PP        P P P              PPPPP   G  G G   P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 772 PPPXXXXPXXGGXXGXPPPPPXXGXXPG 855
           PPP    P   G    PPPPP      G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXP 773
           PPPPPP    GG     P P
Sbjct: 778 PPPPPPAVSAGGSRYYAPAP 797



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -1

Query: 843 PPXGGGGXXPPXPPPRGXXXXXXGXXXXXPPP 748
           PP G  G  PP PPP        G     P P
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 714 PPPPPPPXXXGGG 752
           PPPPPPP    GG
Sbjct: 777 PPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPPXXXXXXXXGGGXGXSXPPP 833
           P P PPP    GG    P PP        G G     PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP-----GVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPP 776
           PPPPPP     G     P PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 720 PPPPPXXXGGGXXXXPXPPXXXXXXXXGGGXGXSXPP 830
           PPPPP   G      P PP        GG    +  P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 717 PPPPPPXXXGGGXXXXPXPPXXXXXXXXGGGXGXSXPPP 833
           PPPPPP    G     P PP         GG     P P
Sbjct: 761 PPPPPP--PPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 704 GXXXPPPPPPXXXGGG 751
           G   PPPPPP   G G
Sbjct: 759 GGPPPPPPPPGVAGAG 774


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPP 776
           PPPPPPP          P PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPP 776
           PPPPPPP          P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
 Frame = -2

Query: 833 GGGGGXPXXPPXXGXXXXGGGXXXXXXPPPXXXG-GGGGGGXXXPPXXXXXXXXGKXXXL 657
           G GGG    PP  G     GG            G GGG GG    P        G    L
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251

Query: 656 GGKXKXXGXXXGG 618
           GG     G   GG
Sbjct: 252 GGFGGGPGGFGGG 264



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 704 GXXXPPPPPPXXXGGGGGXXXXXPXXXXFXPRGGGXGGXXPPP 832
           G    PPP P   GG GG              GGG GG    P
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPP 776
           PPPPPPP     G    P PP
Sbjct: 337 PPPPPPPRSNAAG--SIPLPP 355



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/66 (28%), Positives = 20/66 (30%)
 Frame = +3

Query: 714 PPPPPPPXXXGGGXXXXPXPPXXXXXXXXGGGXGXSXPPPXXGXXAXXXXXXKNXXXXXX 893
           PPPPPPP     G      PP         G    S PPP     +              
Sbjct: 311 PPPPPPPSRRNRG-----KPP------IGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS 359

Query: 894 PXPPPP 911
             PPPP
Sbjct: 360 APPPPP 365



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
 Frame = -1

Query: 816 PPXPPP----RGXXXXXXGXXXXX-PPPPPXXXGGGGGGXXXP 703
           PP PPP    RG      G      PPPPP       G    P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,940
Number of Sequences: 5004
Number of extensions: 49183
Number of successful extensions: 234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)