Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C14
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    29   5.0  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    29   5.0  
05_03_0618 - 16262826-16263097,16263111-16263183                       28   8.8  
03_02_0950 + 12661008-12662312,12662403-12662576                       28   8.8  

>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 204 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 374
           +LY+ +++   G Y+ A+   S     + G  +KE  K L+E+    T++   +L T  G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550

Query: 375 KEIVK 389
             + +
Sbjct: 551 DPMTR 555


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
 Frame = -2

Query: 353 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 207
           V E  G+P+AV D  +    D +  +FL+        G           L   N D+ I 
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764

Query: 206 LLRQYVISSWCKCGVRSQRTHGEDEGK 126
            L +   +  C+  V S R HG  +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 185 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 99
           S  C+CG+RS+R    +E +  +  LG V
Sbjct: 24  SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52


>03_02_0950 + 12661008-12662312,12662403-12662576
          Length = 492

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 189 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 290
           +VL+ +      +GEY+ AIA CS+ L++ K  V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,628
Number of Sequences: 37544
Number of extensions: 303829
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)