Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C13
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0077 - 18866707-18867334,18867410-18867555                       29   4.8  
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768...    29   4.8  
04_04_0900 + 29232365-29232931                                         29   6.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.3  

>11_05_0077 - 18866707-18867334,18867410-18867555
          Length = 257

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 753 GDTYSVGYEKSATXSRKGXKXGTGIPVSGRVGNRRAXEGS 634
           GDT +     +AT +R+  K G G+P  GR+G+RR  E +
Sbjct: 201 GDTATAA--ATATTTRRSSK-GRGLPFLGRLGSRRRREAA 237


>01_01_0975 -
           7686297-7686458,7687117-7687245,7687754-7687831,
           7688011-7688469,7690648-7690788,7691771-7692421
          Length = 539

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 617 AVSPWKLPSCALLFPTLPLTGIPVPXXLPF-REXVALFSXPTLXVSPVRXSVXSXPS 784
           AV+PW +P+     P       P P   PF R  + ++  PT  V P   +    PS
Sbjct: 315 AVAPWVMPTIGFPPPHAAAMVPPPPHPPPFCRPPLHVWGHPTAGVEPTTAAAPPPPS 371


>04_04_0900 + 29232365-29232931
          Length = 188

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = -3

Query: 855 GRXGTGXRGAXGXG*TGGLVHTAQLGXEXTXHRTGDTYSVGYEKSATXSR----KGXKXG 688
           GR G+G  G  G G       T ++  E T      +     EK A   +    +G +  
Sbjct: 63  GREGSGDGGGEGGGEVEAA--TVEMAVERTAAVERVSEEAAVEKEAAERQWRRGRGGRRC 120

Query: 687 TGIPVSGRVGNRR 649
           +GIP SGR G+ R
Sbjct: 121 SGIPASGRSGSGR 133


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,069,554
Number of Sequences: 37544
Number of extensions: 439508
Number of successful extensions: 1209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)