Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C13
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    33   0.26 
Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    29   3.2  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +3

Query: 447 GITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYKDTR 617
           GI +E++ E   SKR      P   +FS+ S  +PL S+ ++  Q ++   ++     T 
Sbjct: 22  GIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTPGTN 79

Query: 618 PFPPGSSPXALSCFXPCRLPEYLFRPXFP 704
              PG+ P     + P RLP   F   FP
Sbjct: 80  AGVPGAFP-----YGPGRLPGNYFAGPFP 103


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 447 GITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYKDTR 617
           GI +E++ E   SKR      P   +FS+ S  +PL S+ ++  Q ++   ++     T 
Sbjct: 22  GIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTPGTN 79

Query: 618 PFPPGSSPXALSCFXPCRLPEYLFRPXFP 704
              PG  P     + P RLP   F   FP
Sbjct: 80  AGVPGEFP-----YGPGRLPGNYFAGPFP 103


>Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical
           protein T05G5.2 protein.
          Length = 205

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +1

Query: 580 EVAKPDRTIKIPGRFPLEAPLXRSPVSXPAAYRNTCSXLXSLPGXRGAFLIXHAVXISSS 759
           +++KPD  I  P R PL   L R     PA    TC+   SL   R  F    A  +   
Sbjct: 88  KISKPDTVISQPIR-PLAPVLPRHETYLPAPIAATCAPDHSLVDYRSTFASSLAPPVPMQ 146

Query: 760 VXRXFAPK 783
           +   F+P+
Sbjct: 147 MPSVFSPQ 154


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 526 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 422
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 526 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 422
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 526 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 422
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 417 GGNTVIHRIRGITQERTCEQKASKRPGTVK 506
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,802
Number of Sequences: 27780
Number of extensions: 334626
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)