Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C13
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.51 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 472 SHVLSCVIPLILWITVLPPLSELIPLAA 389
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 493 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 395
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 576  VRGGETRQDYKDTRPFPPGSSPXALSC 656
            V+ G+    +++  P PP   P  +SC
Sbjct: 1095 VKYGKLVMIHEENAPLPPALPPQVVSC 1121


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 627  PGSSPXALSCFXPCRLPEYLFRPXFPSGKXWRF 725
            PG+       F   RL E   RP    GK W F
Sbjct: 973  PGTGIAPFRGFWHHRLAEIKRRPDLEYGKVWLF 1005


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 SHVLSCVIPLILWITVLPPLSELIPL 395
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,745
Number of Sequences: 438
Number of extensions: 4784
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)