Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C09
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   3.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 201 NNTLYTHGAHTNYRLDIRLNYNPGNFNYVLMY 106
           N T++ +  +  Y  + + NYN  N+N  L Y
Sbjct: 87  NKTIHNNNNY-KYNYNNKYNYNNNNYNKKLYY 117


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -1

Query: 375  FLIGYNLNSXKDYFMFEYINW*KNNIFEGYFKYVYL 268
            + +GY L+S +  +MFE +++ K +  E + + + L
Sbjct: 1012 YYVGYRLSSSEKPYMFETVDFSKEDGKEHHLQIMNL 1047


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 569 PVIWAIKAPFWNXNI*PXPXYLWXPVEXTFPRXFPIFPN 453
           PV   I  P +  N  P P   W  ++   PR   I P+
Sbjct: 112 PVPVPIPVPVYYGNFLPRPMGPWISIQEQIPRFRHIGPS 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,025
Number of Sequences: 438
Number of extensions: 3354
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)