Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C08
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823...    30   2.7  
12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047           29   3.6  
04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904     28   8.3  

>02_02_0558 +
           11477433-11477525,11477632-11477973,11481854-11482381,
           11482459-11482956
          Length = 486

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 131 ASALQVHLQRDDAAALRGGGPRP-DRATSCRGAVLVLVLEHEPALGGQRPASAQLVQQHG 307
           A+  +V     DAA  +GGG    +   +   A  VL+LEH PA GG  P++       G
Sbjct: 16  AAVRKVFRPSKDAADKKGGGGGDREEEAAAEAAPEVLLLEHFPA-GGTSPSAEGTGNDQG 74

Query: 308 G 310
           G
Sbjct: 75  G 75


>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
          Length = 162

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +2

Query: 170 AALRGGGPRPDRATSCRGAVLVLVLEHEPALGGQRPASAQLVQQHGGA 313
           A + G     + ATSC G V V V E E +LGG   + A+ V   GGA
Sbjct: 8   AGVSGLAAAHELATSCAGGVDVTVYEKEDSLGG---SFARTVGVDGGA 52


>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
          Length = 207

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 191 PRPDRATSCRGA--VLVLVLEHEPALGGQRPASAQLVQQHGGAPHRQRPRG 337
           PR   A S R +  +LV V   EP LGG     A      GG    ++PRG
Sbjct: 32  PRAPAALSLRPSARLLVAVAASEPELGGSGGGGAGDGSGSGGGGDSEKPRG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,320
Number of Sequences: 37544
Number of extensions: 258820
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)