Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C06
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053...    30   3.0  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.1  
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699...    28   9.1  
03_02_0220 - 6531255-6532667                                           28   9.1  

>06_03_0507 +
           21603472-21603750,21604371-21604463,21605046-21605372,
           21605588-21605863,21606095-21607114
          Length = 664

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 627 PPWXAPSCAPPVPDPWRXTRXTXSXLFSLRGSRGPLXPHP 746
           PP   P+  PPV   W  T+ + +  +S+R  +    P P
Sbjct: 397 PPLQLPAGEPPVTPAWNDTQRSKAFTYSIRARKDTNRPPP 436


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>05_07_0200 -
           28368890-28369021,28369169-28369303,28369918-28369947,
           28370019-28370093,28370222-28370333,28370440-28370621,
           28370723-28370854,28372193-28373479
          Length = 694

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 627 PPWXAPSCAPPVPDPWRXTRXTXSXLFSLRGSRGPLXPHPXP 752
           PP   P   PP P   R    + S   S  GS GP  P P P
Sbjct: 305 PPIPPPPPPPPPPPMPRSRSASPSPSTSSSGSAGPPAPPPPP 346


>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 625 FPPGKLPRALPLFPTP 672
           FP GKLP  LPL P+P
Sbjct: 55  FPLGKLPSLLPLLPSP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,286,671
Number of Sequences: 37544
Number of extensions: 375166
Number of successful extensions: 1263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)