Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_C03
         (1257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.79 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.1  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect(2) = 0.79
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 1157 PXXPPPPPPXP 1189
            P  PPPPPP P
Sbjct: 6    PGNPPPPPPPP 16



 Score = 22.6 bits (46), Expect(2) = 0.79
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 1166 PPPPPPXPXXXXXPP 1210
            PPPPPP       PP
Sbjct: 11   PPPPPPGFEPPSQPP 25


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 1091 FL*IKFTFDLVNXIXRXNWW*TPXXPPPPPPXPXXXXXPPXXR 1219
            F  + F+  L +   R  W      PPPPPP P      P  R
Sbjct: 345  FFPLGFSPHLNDESSRSRWSNISYSPPPPPPPPELLNHSPKSR 387


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/52 (26%), Positives = 18/52 (34%)
 Frame = +3

Query: 810 PXXLHLMFFHHGNSFHRXNPRNQTXKANNSXKEKVXXLGPFRN*PXXLGXSP 965
           P   H     HG   H  N  N    + N   +K    GPF+  P     +P
Sbjct: 492 PKSSHHFDERHGGDRHEKNLSNSRRYSRNKFHKKKQSSGPFQYYPDAFSFTP 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,764,125
Number of Sequences: 5004
Number of extensions: 62609
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)