Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_C03
(1257 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 27 0.33
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 27 0.33
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 26 1.2
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 3.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 25 3.6
Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical pr... 29 5.2
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 6.9
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 6.9
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 24 7.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 24 7.3
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 24 7.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 24 7.6
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 24 7.7
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 24 7.8
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 25 9.7
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 27.1 bits (57), Expect(2) = 0.33
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXPP 1210
PPPPPP P PP
Sbjct: 86 PPPPPPPPTLKAPPP 100
Score = 25.0 bits (52), Expect(2) = 0.33
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 1154 TPXXPPPPPP 1183
TP PPPPPP
Sbjct: 66 TPPPPPPPPP 75
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 27.1 bits (57), Expect(2) = 0.33
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXPP 1210
PPPPPP P PP
Sbjct: 754 PPPPPPPPPLAAAPP 768
Score = 25.0 bits (52), Expect(2) = 0.33
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 1154 TPXXPPPPPP 1183
TP PPPPPP
Sbjct: 753 TPPPPPPPPP 762
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 25.8 bits (54), Expect(2) = 1.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 1154 TPXXPPPPPPXP 1189
+P PPPPPP P
Sbjct: 1335 SPSPPPPPPPPP 1346
Score = 25.0 bits (52), Expect(2) = 3.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 1154 TPXXPPPPPP 1183
TP PPPPPP
Sbjct: 1353 TPVPPPPPPP 1362
Score = 24.2 bits (50), Expect(2) = 1.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXP 1207
PPPPPP P P
Sbjct: 1356 PPPPPPPPTMSKAP 1369
Score = 23.4 bits (48), Expect(2) = 3.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 1166 PPPPPPXP 1189
PPPPPP P
Sbjct: 1390 PPPPPPLP 1397
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 30.3 bits (65), Expect = 3.0
Identities = 38/132 (28%), Positives = 43/132 (32%), Gaps = 11/132 (8%)
Frame = +2
Query: 320 GXKPVWQRPNXXRPNG-NGAQILNGIWLAXP-----PXEPFPRGKNQPFGA*XPP*XGEE 481
G P W PN PNG NG N P P +P P G N+P P G
Sbjct: 1031 GPTPNWPSPNGPSPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPN 1090
Query: 482 RLXVEIGSXTGGGXN*ETPKKXSLTLGAKGSSEPPNXFWNWPWE-----KPKGXKFXFGS 646
G P K G G S+P N P E KP S
Sbjct: 1091 GPSDPNKPGPNGPNEPSDPNKPGPN-GPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPS 1149
Query: 647 RPHRRGPGGIKG 682
P++ GP G G
Sbjct: 1150 DPNKPGPNGPNG 1161
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 25.0 bits (52), Expect(2) = 3.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 1154 TPXXPPPPPP 1183
TP PPPPPP
Sbjct: 23 TPQPPPPPPP 32
Score = 23.4 bits (48), Expect(2) = 3.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 1166 PPPPPPXP 1189
PPPPPP P
Sbjct: 28 PPPPPPKP 35
>Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical
protein R06B9.1 protein.
Length = 423
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 379 LGPVPIRPXAIRPLPNRFXTPXTPP*KNL*VINSP 275
+G VPIR P+PN + PP NL +N P
Sbjct: 328 IGTVPIRNYLPPPIPNNYPIGLPPPYANLTDVNVP 362
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 1157 PXXPPPPPPXPXXXXXPP 1210
P PPPPPP P PP
Sbjct: 60 PMCPPPPPPPPPPMCPPP 77
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical protein
R144.4a protein.
Length = 360
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 1157 PXXPPPPPPXPXXXXXPP 1210
P PPPPPP P PP
Sbjct: 6 PPPPPPPPPPPPAASAPP 23
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 1157 PXXPPPPPPXPXXXXXPP 1210
P PPPPPP P PP
Sbjct: 7 PPPPPPPPPPPAASAPPP 24
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical protein
R144.4b protein.
Length = 362
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 1157 PXXPPPPPPXPXXXXXPP 1210
P PPPPPP P PP
Sbjct: 6 PPPPPPPPPPPPAASAPP 23
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 1157 PXXPPPPPPXPXXXXXPP 1210
P PPPPPP P PP
Sbjct: 7 PPPPPPPPPPPAASAPPP 24
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
C33B4.3a protein.
Length = 1110
Score = 24.2 bits (50), Expect(2) = 7.3
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXP 1207
PPPPPP P P
Sbjct: 765 PPPPPPPPPPHCEP 778
Score = 23.0 bits (47), Expect(2) = 7.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 721 PKTPPPPPP 729
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical protein
C33B4.3b protein.
Length = 993
Score = 24.2 bits (50), Expect(2) = 7.3
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXP 1207
PPPPPP P P
Sbjct: 765 PPPPPPPPPPHCEP 778
Score = 23.0 bits (47), Expect(2) = 7.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 721 PKTPPPPPP 729
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 24.2 bits (50), Expect(2) = 7.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXP 1207
PPPPPP P P
Sbjct: 650 PPPPPPPPSGAGGP 663
Score = 23.8 bits (49), Expect(2) = 9.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXPP 1210
PPPPPP P P
Sbjct: 610 PPPPPPPPQSFGMAP 624
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 571 PARPPPPPP 579
Score = 23.0 bits (47), Expect(2) = 7.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 609 PPPPPPPPP 617
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 24.2 bits (50), Expect(2) = 7.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXP 1207
PPPPPP P P
Sbjct: 476 PPPPPPPPSGAGGP 489
Score = 23.8 bits (49), Expect(2) = 9.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXPP 1210
PPPPPP P P
Sbjct: 436 PPPPPPPPQSFGMAP 450
Score = 23.0 bits (47), Expect(2) = 9.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 397 PARPPPPPP 405
Score = 23.0 bits (47), Expect(2) = 7.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 475 PPPPPPPPP 483
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 24.2 bits (50), Expect(2) = 7.7
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXP 1207
PPPPPP P P
Sbjct: 308 PPPPPPPPIHEAQP 321
Score = 23.0 bits (47), Expect(2) = 7.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 306 PKPPPPPPP 314
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 24.2 bits (50), Expect(2) = 7.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 1166 PPPPPPXPXXXXXP 1207
PPPPPP P P
Sbjct: 222 PPPPPPPPISLIAP 235
Score = 23.0 bits (47), Expect(2) = 7.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1157 PXXPPPPPP 1183
P PPPPPP
Sbjct: 220 PTPPPPPPP 228
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 25.4 bits (53), Expect(2) = 9.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 1157 PXXPPPPPPXP 1189
P PPPPPP P
Sbjct: 29 PSLPPPPPPPP 39
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +2
Query: 1172 PPPPXPXXXXXPP 1210
PPPP P PP
Sbjct: 32 PPPPPPPPSLYPP 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,518,214
Number of Sequences: 27780
Number of extensions: 393435
Number of successful extensions: 2149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -